Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47412 * 303.67090 * 3 2 1 5 5 C 1.50702 * 109.47067 * 183.66888 * 3 2 1 6 6 H 1.07999 * 120.00244 * 239.99854 * 5 3 2 7 7 C 1.37879 * 119.99720 * 60.00431 * 5 3 2 8 8 N 1.31510 * 120.00098 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99772 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47323 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47346 * 119.99557 * 9 7 5 12 12 H 1.48500 * 109.47132 * 239.99646 * 9 7 5 13 13 N 1.46898 * 109.47216 * 63.66991 * 3 2 1 14 14 C 1.46903 * 111.00369 * 206.92829 * 13 3 2 15 15 H 1.09001 * 110.45413 * 30.68389 * 14 13 3 16 16 C 1.54480 * 110.50624 * 267.93572 * 14 13 3 17 17 O 1.44432 * 104.79816 * 217.37225 * 16 14 13 18 18 C 1.44423 * 105.27370 * 40.51781 * 17 16 14 19 19 C 1.54473 * 104.80241 * 319.48075 * 18 17 16 20 20 H 1.08999 * 110.63207 * 265.28387 * 19 18 17 21 21 O 1.42905 * 110.51273 * 142.62649 * 19 18 17 22 22 H 1.08999 * 109.46896 * 294.86978 * 1 2 3 23 23 H 1.09007 * 109.46827 * 54.86627 * 1 2 3 24 24 H 1.08995 * 109.46831 * 174.86653 * 1 2 3 25 25 H 1.09004 * 109.47163 * 240.00431 * 2 1 3 26 26 H 1.09001 * 109.47318 * 120.00029 * 2 1 3 27 27 H 0.97001 * 119.99687 * 180.02562 * 8 7 5 28 28 H 1.00906 * 111.00396 * 82.96922 * 13 3 2 29 29 H 1.09001 * 110.37628 * 336.20020 * 16 14 13 30 30 H 1.09004 * 110.37598 * 98.54740 * 16 14 13 31 31 H 1.08999 * 110.36770 * 200.65591 * 18 17 16 32 32 H 1.08999 * 110.37724 * 78.32055 * 18 17 16 33 33 H 0.96700 * 113.99167 * 65.35750 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 -0.8552 5 6 3.5443 1.4435 -0.0909 6 1 4.1325 1.8941 0.6948 7 6 4.1696 0.8692 -1.1773 8 7 3.4533 0.3201 -2.1338 9 14 6.0341 0.8710 -1.2903 10 1 6.6019 1.5463 -0.0958 11 1 6.5279 -0.5282 -1.3499 12 1 6.4550 1.5970 -2.5155 13 7 1.6240 2.1090 1.2413 14 6 1.5048 3.5600 1.0454 15 1 1.2132 3.7831 0.0191 16 6 2.8332 4.2648 1.3993 17 8 2.4375 5.5009 2.0329 18 6 1.3185 5.1544 2.8776 19 6 0.4855 4.1587 2.0403 20 1 -0.3100 4.6779 1.5058 21 8 -0.0593 3.1352 2.8756 22 1 -0.3633 0.4322 0.9324 23 1 -0.3633 0.5915 -0.8405 24 1 -0.3633 -1.0235 -0.0919 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8933 -0.0843 -2.8979 28 1 2.2593 1.8969 1.9960 29 1 3.4148 3.6538 2.0896 30 1 3.4072 4.4685 0.4953 31 1 0.7290 6.0415 3.1092 32 1 1.6679 4.6799 3.7945 33 1 -0.7055 3.4558 3.5196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323897650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -93.913299 kcal Electronic energy + Delta-G solvation = -15389.070509 eV Core-core repulsion = 12835.821962 eV Total energy + Delta-G solvation = -2553.248547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36609 -35.83834 -35.64806 -32.46340 -31.17125 -28.76579 -27.54459 -25.72263 -22.69418 -22.55772 -20.10688 -19.55115 -17.20877 -16.67109 -16.06280 -15.03675 -14.81348 -14.68828 -13.84062 -13.39823 -13.10552 -12.77524 -12.51107 -12.13618 -11.72022 -11.35228 -11.16776 -10.99026 -10.80448 -10.71430 -10.53619 -10.14868 -9.78986 -9.55617 -9.41802 -9.39674 -8.98006 -8.38889 -7.19408 -6.00446 -4.14370 3.24979 3.33982 3.36746 4.12741 4.38098 4.74978 4.95025 5.08434 5.15708 5.26553 5.54893 5.68022 5.75189 5.94945 6.05345 6.35732 6.39728 6.46921 6.58037 6.78223 7.04632 7.14875 7.25208 7.45684 7.59974 7.77587 7.96050 8.10986 8.14282 8.35496 8.66598 8.99611 9.53875 10.99056 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.010817 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.766642 B = 2588.003889 C = 3372.177290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C 0.212 3.788 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.655 5.655 14 C 0.076 3.924 15 H 0.089 0.911 16 C 0.025 3.975 17 O -0.382 6.382 18 C 0.012 3.988 19 C 0.075 3.925 20 H 0.062 0.938 21 O -0.526 6.526 22 H 0.051 0.949 23 H 0.034 0.966 24 H 0.022 0.978 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 6.126 7.112 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 C 0.104 3.896 4 H 0.049 0.951 5 C -0.586 4.586 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.285 5.285 14 C -0.037 4.037 15 H 0.107 0.893 16 C -0.053 4.053 17 O -0.300 6.300 18 C -0.066 4.066 19 C 0.014 3.986 20 H 0.080 0.920 21 O -0.328 6.328 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.107 0.893 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.279 5.729 6.428 10.100 hybrid contribution 1.638 0.436 0.115 1.699 sum -3.641 6.165 6.543 9.699 Atomic orbital electron populations 1.21685 0.98938 0.98093 1.00610 1.21470 0.92163 0.99074 1.01563 1.19302 0.92639 0.91432 0.86201 0.95133 1.21943 0.92611 1.37992 1.06018 0.92705 1.24933 0.97910 0.94946 0.95662 1.69890 1.34827 1.37789 1.09645 0.86631 0.86189 0.77778 0.77945 1.19890 1.20968 1.21060 1.60670 1.54764 1.03767 1.09313 1.22806 0.91855 0.91268 0.97755 0.89291 1.24400 0.98016 0.85068 0.97827 1.89081 1.48855 1.30893 1.61151 1.24172 0.88851 0.98866 0.94686 1.23275 0.95326 0.88257 0.91712 0.92014 1.86846 1.61081 1.33908 1.50932 0.92989 0.94699 0.95864 0.89319 0.95098 0.92929 0.85016 0.92050 0.88459 0.89776 0.91893 0.79569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.72 37.16 0.36 -2.51 16 2 C -0.10 -2.51 5.44 -26.73 -0.15 -2.66 16 3 C 0.21 5.17 1.99 -68.86 -0.14 5.03 16 4 H 0.03 0.83 7.38 -51.93 -0.38 0.44 16 5 C -0.55 -14.31 8.06 -34.44 -0.28 -14.59 16 6 H 0.05 1.42 7.20 -52.49 -0.38 1.04 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.69 11.30 55.43 0.63 -24.07 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.66 -13.74 4.67 -99.31 -0.46 -14.20 16 14 C 0.08 1.41 3.44 -66.14 -0.23 1.18 16 15 H 0.09 1.76 7.39 -51.93 -0.38 1.37 16 16 C 0.02 0.46 6.44 37.93 0.24 0.70 16 17 O -0.38 -6.59 11.65 -35.23 -0.41 -7.00 16 18 C 0.01 0.17 7.38 37.93 0.28 0.45 16 19 C 0.08 1.13 4.49 -25.17 -0.11 1.02 16 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 21 O -0.53 -7.87 12.40 -35.23 -0.44 -8.30 16 22 H 0.05 1.08 7.86 -51.93 -0.41 0.67 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 2.38 5.98 -51.93 -0.31 2.06 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.33 7.09 7.69 -39.29 -0.30 6.79 16 29 H 0.06 1.15 7.39 -51.93 -0.38 0.77 16 30 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.36 3.50 9.12 45.56 0.42 3.91 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -28.75 268.40 -6.00 -34.75 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.22 Total: 8.51 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.11 Total: -9.64 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.16 Total: -38.27 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.85 Total: -15.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.75 -6.00 -34.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323897650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.165 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds