Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47412 * 303.67090 * 3 2 1 5 5 C 1.50702 * 109.47067 * 183.66888 * 3 2 1 6 6 H 1.07999 * 120.00244 * 239.99854 * 5 3 2 7 7 C 1.37879 * 119.99720 * 60.00431 * 5 3 2 8 8 N 1.31510 * 120.00098 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99772 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47323 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47346 * 119.99557 * 9 7 5 12 12 H 1.48500 * 109.47132 * 239.99646 * 9 7 5 13 13 N 1.46898 * 109.47216 * 63.66991 * 3 2 1 14 14 C 1.46903 * 111.00369 * 206.92829 * 13 3 2 15 15 H 1.09001 * 110.45413 * 30.68389 * 14 13 3 16 16 C 1.54480 * 110.50624 * 267.93572 * 14 13 3 17 17 O 1.44432 * 104.79816 * 217.37225 * 16 14 13 18 18 C 1.44423 * 105.27370 * 40.51781 * 17 16 14 19 19 C 1.54473 * 104.80241 * 319.48075 * 18 17 16 20 20 H 1.08999 * 110.63207 * 265.28387 * 19 18 17 21 21 O 1.42905 * 110.51273 * 142.62649 * 19 18 17 22 22 H 1.08999 * 109.46896 * 294.86978 * 1 2 3 23 23 H 1.09007 * 109.46827 * 54.86627 * 1 2 3 24 24 H 1.08995 * 109.46831 * 174.86653 * 1 2 3 25 25 H 1.09004 * 109.47163 * 240.00431 * 2 1 3 26 26 H 1.09001 * 109.47318 * 120.00029 * 2 1 3 27 27 H 0.97001 * 119.99687 * 180.02562 * 8 7 5 28 28 H 1.00906 * 111.00396 * 82.96922 * 13 3 2 29 29 H 1.09001 * 110.37628 * 336.20020 * 16 14 13 30 30 H 1.09004 * 110.37598 * 98.54740 * 16 14 13 31 31 H 1.08999 * 110.36770 * 200.65591 * 18 17 16 32 32 H 1.08999 * 110.37724 * 78.32055 * 18 17 16 33 33 H 0.96700 * 113.99167 * 65.35750 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 -0.8552 5 6 3.5443 1.4435 -0.0909 6 1 4.1325 1.8941 0.6948 7 6 4.1696 0.8692 -1.1773 8 7 3.4533 0.3201 -2.1338 9 14 6.0341 0.8710 -1.2903 10 1 6.6019 1.5463 -0.0958 11 1 6.5279 -0.5282 -1.3499 12 1 6.4550 1.5970 -2.5155 13 7 1.6240 2.1090 1.2413 14 6 1.5048 3.5600 1.0454 15 1 1.2132 3.7831 0.0191 16 6 2.8332 4.2648 1.3993 17 8 2.4375 5.5009 2.0329 18 6 1.3185 5.1544 2.8776 19 6 0.4855 4.1587 2.0403 20 1 -0.3100 4.6779 1.5058 21 8 -0.0593 3.1352 2.8756 22 1 -0.3633 0.4322 0.9324 23 1 -0.3633 0.5915 -0.8405 24 1 -0.3633 -1.0235 -0.0919 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8933 -0.0843 -2.8979 28 1 2.2593 1.8969 1.9960 29 1 3.4148 3.6538 2.0896 30 1 3.4072 4.4685 0.4953 31 1 0.7290 6.0415 3.1092 32 1 1.6679 4.6799 3.7945 33 1 -0.7055 3.4558 3.5196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323897650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -116.438907 kcal Electronic energy + Delta-G solvation = -15390.047293 eV Core-core repulsion = 12835.821962 eV Total energy + Delta-G solvation = -2554.225331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71365 -37.59566 -36.88327 -34.32759 -32.98501 -30.14470 -29.06531 -27.59148 -24.54138 -23.90205 -21.56469 -21.38616 -18.69251 -18.39074 -17.44057 -16.70850 -16.40961 -16.07026 -15.49128 -14.94235 -14.82119 -14.30006 -14.02993 -13.59594 -13.40188 -13.15796 -13.03917 -12.67288 -12.56464 -12.37407 -12.05173 -11.92883 -11.46973 -11.29042 -11.04386 -10.88755 -10.59920 -10.45291 -8.95773 -8.03410 -6.26076 1.36857 1.40518 1.49481 2.40209 2.86775 3.15615 3.57754 3.61857 3.80892 3.83570 4.17368 4.31401 4.48023 4.62470 4.77941 4.80356 4.81381 4.89324 4.94951 5.00173 5.19791 5.45212 5.54052 5.64446 5.72379 5.81035 6.11964 6.20582 6.40167 6.78965 7.03037 7.15031 7.45716 8.92451 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.010817 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.766642 B = 2588.003889 C = 3372.177290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.220 3.780 4 H -0.001 1.001 5 C -0.554 4.554 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.646 5.646 14 C 0.064 3.936 15 H 0.071 0.929 16 C 0.034 3.966 17 O -0.393 6.393 18 C 0.014 3.986 19 C 0.087 3.913 20 H 0.080 0.920 21 O -0.545 6.545 22 H 0.057 0.943 23 H 0.028 0.972 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.330 0.670 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 6.869 8.471 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.593 4.593 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.275 5.275 14 C -0.048 4.048 15 H 0.089 0.911 16 C -0.045 4.045 17 O -0.311 6.311 18 C -0.063 4.063 19 C 0.026 3.974 20 H 0.098 0.902 21 O -0.351 6.351 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.734 6.493 7.817 11.668 hybrid contribution 1.716 0.240 -0.265 1.753 sum -4.018 6.733 7.552 10.886 Atomic orbital electron populations 1.21526 0.96500 0.99282 1.00622 1.21344 0.94314 0.98444 0.99858 1.19070 0.91639 0.91572 0.86616 0.98314 1.22221 0.93753 1.37444 1.05872 0.92769 1.25639 1.01852 0.94884 0.95552 1.70014 1.36314 1.38565 1.10108 0.85688 0.81472 0.77658 0.77883 1.19383 1.20774 1.20931 1.60629 1.54102 1.05262 1.07525 1.22908 0.93581 0.89968 0.98324 0.91092 1.24129 0.97577 0.85588 0.97165 1.89068 1.50190 1.30156 1.61694 1.24372 0.87837 1.00167 0.93894 1.23099 0.95020 0.88009 0.91275 0.90187 1.86771 1.62122 1.34454 1.51715 0.92354 0.95267 0.93962 0.92148 0.95522 0.92974 0.85209 0.92635 0.90097 0.86180 0.91283 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.72 71.98 0.70 -4.36 16 2 C -0.10 -4.91 5.44 30.59 0.17 -4.74 16 3 C 0.22 10.89 1.99 44.17 0.09 10.97 16 4 H 0.00 -0.06 7.38 -2.39 -0.02 -0.08 16 5 C -0.55 -29.35 8.06 25.60 0.21 -29.15 16 6 H 0.05 2.82 7.20 -2.91 -0.02 2.80 16 7 C 0.02 1.13 5.30 84.66 0.45 1.58 16 8 N -0.91 -51.85 11.30 21.45 0.24 -51.60 16 9 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.65 -26.91 4.67 -468.10 -2.19 -29.10 16 14 C 0.06 2.37 3.44 45.93 0.16 2.53 16 15 H 0.07 2.85 7.39 -2.39 -0.02 2.83 16 16 C 0.03 1.23 6.44 72.49 0.47 1.69 16 17 O -0.39 -12.85 11.65 -148.98 -1.74 -14.59 16 18 C 0.01 0.35 7.38 72.48 0.53 0.88 16 19 C 0.09 2.40 4.49 31.61 0.14 2.54 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 O -0.55 -14.75 12.40 -148.98 -1.85 -16.59 16 22 H 0.06 2.33 7.86 -2.39 -0.02 2.31 16 23 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 3.30 5.98 -2.39 -0.01 3.28 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.33 13.96 7.69 -89.69 -0.69 13.27 16 29 H 0.06 2.06 7.39 -2.39 -0.02 2.05 16 30 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 33 H 0.39 6.08 9.12 -74.06 -0.68 5.41 16 Total: -1.00 -61.17 268.40 -0.85 -62.02 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.26 Total: 22.67 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 2.91 Total: -18.05 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.94 Total: -80.70 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -3.58 Total: -31.18 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.17 -0.85 -62.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323897650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.422 kcal (2) G-P(sol) polarization free energy of solvation -61.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds