Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08998 * 109.47501 * 302.93079 * 3 2 1 5 5 C 1.50703 * 109.47340 * 182.92707 * 3 2 1 6 6 H 1.07997 * 119.99840 * 245.60300 * 5 3 2 7 7 C 1.37881 * 119.99707 * 65.32080 * 5 3 2 8 8 N 1.31517 * 119.99532 * 193.61502 * 7 5 3 9 9 Si 1.86793 * 119.99802 * 13.61389 * 7 5 3 10 10 H 1.48507 * 109.46988 * 85.49346 * 9 7 5 11 11 H 1.48506 * 109.46920 * 205.48529 * 9 7 5 12 12 H 1.48497 * 109.47637 * 325.48728 * 9 7 5 13 13 N 1.46898 * 109.46958 * 62.92895 * 3 2 1 14 14 C 1.46900 * 111.00232 * 203.81798 * 13 3 2 15 15 H 1.08998 * 110.45773 * 319.51466 * 14 13 3 16 16 C 1.54474 * 110.50886 * 82.11615 * 14 13 3 17 17 O 1.44428 * 104.80087 * 142.62536 * 16 14 13 18 18 C 1.44427 * 105.27688 * 319.48724 * 17 16 14 19 19 C 1.54478 * 104.79910 * 40.51161 * 18 17 16 20 20 H 1.08999 * 110.50852 * 94.66830 * 19 18 17 21 21 O 1.42897 * 110.50877 * 217.37439 * 19 18 17 22 22 H 1.08994 * 109.47270 * 184.53931 * 1 2 3 23 23 H 1.08994 * 109.47169 * 304.54117 * 1 2 3 24 24 H 1.09011 * 109.46890 * 64.54209 * 1 2 3 25 25 H 1.08997 * 109.47253 * 240.00382 * 2 1 3 26 26 H 1.08995 * 109.47033 * 120.00045 * 2 1 3 27 27 H 0.97000 * 119.99269 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00208 * 79.86621 * 13 3 2 29 29 H 1.08998 * 110.37396 * 261.45589 * 16 14 13 30 30 H 1.08998 * 110.37420 * 23.79624 * 16 14 13 31 31 H 1.08999 * 110.37188 * 159.34108 * 18 17 16 32 32 H 1.08996 * 110.36774 * 281.56879 * 18 17 16 33 33 H 0.96705 * 114.00244 * 294.64552 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6345 1.9713 -0.8625 5 6 3.5453 1.4432 -0.0726 6 1 4.1258 1.8152 0.7587 7 6 4.1814 0.9634 -1.1979 8 7 5.4720 0.7120 -1.1668 9 14 3.2102 0.6705 -2.7663 10 1 3.1258 1.9355 -3.5398 11 1 3.8913 -0.3652 -3.5842 12 1 1.8415 0.2084 -2.4222 13 7 1.6090 2.1142 1.2333 14 6 1.5633 3.5711 1.0509 15 1 2.4179 3.9087 0.4646 16 6 0.2411 3.9902 0.3708 17 8 -0.1209 5.2365 1.0046 18 6 0.1842 5.0543 2.4045 19 6 1.5250 4.2872 2.4194 20 1 2.3608 4.9808 2.5111 21 8 1.5447 3.3341 3.4840 22 1 -0.3633 -1.0244 0.0813 23 1 -0.3633 0.5826 0.8465 24 1 -0.3633 0.4418 -0.9280 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.9195 0.3749 -1.9586 28 1 2.2055 1.8654 2.0080 29 1 0.3945 4.1387 -0.6980 30 1 -0.5293 3.2388 0.5437 31 1 0.2940 6.0200 2.8978 32 1 -0.5959 4.4677 2.8896 33 1 1.5222 3.7293 4.3663 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323897659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -116.207143 kcal Electronic energy + Delta-G solvation = -15425.839097 eV Core-core repulsion = 12871.623816 eV Total energy + Delta-G solvation = -2554.215281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72894 -37.76453 -37.03455 -34.36817 -33.30858 -30.25401 -29.35259 -27.88786 -24.51515 -23.72778 -21.58562 -21.30715 -19.09218 -18.57130 -17.40883 -16.86437 -16.29260 -16.26957 -15.73237 -15.44670 -14.93486 -14.45856 -14.04984 -13.89352 -13.54255 -13.30752 -12.95946 -12.80450 -12.61176 -12.36965 -12.10498 -11.61694 -11.47165 -11.39554 -11.11186 -11.02278 -10.66698 -10.60608 -9.06318 -8.34417 -6.35964 1.33166 1.36335 1.46121 2.32957 2.82285 3.01284 3.39240 3.52828 3.66046 3.90149 4.15405 4.36070 4.44264 4.55086 4.58937 4.76084 4.78986 4.83532 4.86018 4.93706 4.99662 5.25527 5.38868 5.49490 5.54360 5.74215 5.74706 6.10207 6.42684 6.60520 6.79642 7.03185 7.32059 8.82070 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032944 B = 0.009975 C = 0.009573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.721385 B = 2806.220523 C = 2924.087921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.190 3.810 4 H 0.026 0.974 5 C -0.551 4.551 6 H 0.027 0.973 7 C 0.020 3.980 8 N -0.943 5.943 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.218 1.218 13 N -0.644 5.644 14 C 0.051 3.949 15 H 0.038 0.962 16 C 0.060 3.940 17 O -0.389 6.389 18 C 0.024 3.976 19 C 0.077 3.923 20 H 0.074 0.926 21 O -0.557 6.557 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.341 0.659 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 6.081 5.849 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C 0.080 3.920 4 H 0.044 0.956 5 C -0.589 4.589 6 H 0.045 0.955 7 C -0.179 4.179 8 N -0.582 5.582 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.140 1.140 13 N -0.276 5.276 14 C -0.060 4.060 15 H 0.056 0.944 16 C -0.017 4.017 17 O -0.307 6.307 18 C -0.053 4.053 19 C 0.017 3.983 20 H 0.092 0.908 21 O -0.365 6.365 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.559 5.713 5.051 14.693 hybrid contribution 1.687 0.227 -0.329 1.733 sum -10.872 5.940 4.721 13.258 Atomic orbital electron populations 1.21641 0.94869 1.00999 1.01576 1.21793 0.96115 0.97351 0.99955 1.19434 0.90676 0.92314 0.89582 0.95612 1.22021 0.92836 1.42020 1.02052 0.95516 1.25849 0.95587 0.93992 1.02486 1.70130 1.11891 1.45768 1.30443 0.86268 0.81771 0.78202 0.78956 1.20142 1.21540 1.14024 1.60710 1.56325 1.04095 1.06464 1.22845 0.97348 0.90728 0.95104 0.94445 1.23455 0.95045 0.85826 0.97378 1.89072 1.85987 1.34854 1.20821 1.24247 0.95674 1.02018 0.83359 1.23168 0.97699 0.89996 0.87394 0.90802 1.86546 1.97116 1.35231 1.17614 0.92790 0.91618 0.93768 0.93740 0.93886 0.92672 0.84013 0.89545 0.90771 0.86333 0.90614 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.84 71.98 0.71 -3.84 16 2 C -0.11 -4.82 4.98 30.59 0.15 -4.67 16 3 C 0.19 8.70 1.44 44.17 0.06 8.76 16 4 H 0.03 1.19 6.33 -2.39 -0.02 1.18 16 5 C -0.55 -31.05 8.68 25.60 0.22 -30.83 16 6 H 0.03 1.69 7.96 -2.91 -0.02 1.67 16 7 C 0.02 1.13 5.37 84.66 0.45 1.58 16 8 N -0.94 -58.92 13.96 21.45 0.30 -58.63 16 9 Si 0.92 43.25 25.87 68.60 1.77 45.02 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.22 -9.14 5.31 99.48 0.53 -8.61 16 13 N -0.64 -25.93 4.96 -468.13 -2.32 -28.25 16 14 C 0.05 1.86 3.24 45.93 0.15 2.01 16 15 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 16 C 0.06 1.95 6.93 72.48 0.50 2.45 16 17 O -0.39 -11.69 11.65 -148.98 -1.74 -13.42 16 18 C 0.02 0.56 7.38 72.48 0.53 1.09 16 19 C 0.08 2.16 4.48 31.61 0.14 2.30 16 20 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 21 O -0.56 -14.80 11.57 -148.98 -1.72 -16.52 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 23 H 0.06 2.20 7.56 -2.39 -0.02 2.18 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.04 1.96 4.67 -2.39 -0.01 1.95 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.34 14.78 7.04 -89.69 -0.63 14.15 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.36 8.06 -2.39 -0.02 2.35 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 33 H 0.40 6.01 9.12 -74.05 -0.68 5.34 16 Total: -1.00 -66.86 263.60 -1.15 -68.02 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.38 Total: 24.93 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 2.93 Total: -21.15 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -2.02 Total: -86.88 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -3.46 Total: -29.95 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.77 Total: 45.02 kcal Total: -66.86 -1.15 -68.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323897659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.190 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds