Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99844 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.80727 * 328.62569 * 13 12 11 15 15 C 1.54993 * 110.90734 * 92.29740 * 13 12 11 16 16 O 1.44376 * 103.49641 * 155.22253 * 15 13 12 17 17 C 1.43753 * 106.96862 * 319.93722 * 16 15 13 18 18 C 1.54099 * 107.29706 * 26.51261 * 17 16 15 19 19 H 1.08996 * 110.59643 * 116.69957 * 18 17 16 20 20 O 1.42892 * 110.48656 * 239.29756 * 18 17 16 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 27 27 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 28 28 H 1.00893 * 111.00113 * 303.94754 * 12 11 10 29 29 H 1.09011 * 110.61592 * 273.72313 * 15 13 12 30 30 H 1.08996 * 110.62102 * 36.71391 * 15 13 12 31 31 H 1.09000 * 109.87679 * 267.08469 * 17 16 15 32 32 H 1.09008 * 109.87452 * 145.93953 * 17 16 15 33 33 H 0.96709 * 113.99925 * 294.76272 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 7.5096 -4.0607 0.0282 14 1 7.9221 -3.2023 -0.5019 15 6 8.0549 -4.1313 1.4773 16 8 9.3505 -4.7486 1.3201 17 6 9.2046 -5.7851 0.3348 18 6 8.0294 -5.3867 -0.5788 19 1 8.3744 -5.2292 -1.6006 20 8 7.0087 -6.3862 -0.5452 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 3.6545 -3.1486 0.9003 25 1 3.6618 -3.1522 -0.8796 26 1 5.9188 -2.1245 -0.8715 27 1 5.9108 -2.1211 0.9084 28 1 5.6621 -4.5367 0.8023 29 1 8.1549 -3.1310 1.8989 30 1 7.4086 -4.7488 2.1010 31 1 8.9880 -6.7344 0.8249 32 1 10.1190 -5.8693 -0.2527 33 1 7.2802 -7.2382 -0.9134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323901514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -99.607719 kcal Electronic energy + Delta-G solvation = -14410.453858 eV Core-core repulsion = 11856.958383 eV Total energy + Delta-G solvation = -2553.495476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97853 -36.25223 -36.01130 -33.47238 -31.62836 -29.49817 -28.45748 -25.91539 -23.11871 -22.16180 -21.01381 -19.95624 -17.88473 -16.80611 -16.53058 -15.89073 -15.46259 -14.78610 -14.39133 -14.16869 -13.85859 -13.46631 -13.03677 -12.64184 -12.28607 -12.17515 -11.62722 -11.54716 -11.19087 -10.87288 -10.77659 -10.21379 -9.99639 -9.92982 -9.70731 -9.55737 -9.14820 -8.51127 -8.18069 -6.01407 -3.99055 3.32284 3.39357 3.42898 3.52277 4.05152 4.31749 4.35714 4.47466 4.56959 4.85883 4.93815 5.14056 5.32416 5.39151 5.45579 5.50978 5.65613 5.69213 5.78302 6.16529 6.46678 6.57354 6.60739 6.93637 7.14826 7.36128 7.45188 7.52636 7.59017 7.83047 8.58091 9.04454 9.61192 11.12257 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.059567 B = 0.005193 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.944076 B = 5390.497409 C = 5677.167079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.053 3.947 12 N -0.660 5.660 13 C 0.063 3.937 14 H 0.101 0.899 15 C 0.017 3.983 16 O -0.375 6.375 17 C 0.013 3.987 18 C 0.078 3.922 19 H 0.073 0.927 20 O -0.537 6.537 21 H 0.262 0.738 22 H 0.011 0.989 23 H 0.013 0.987 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.347 0.653 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.605 -10.258 -0.046 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.075 4.075 12 N -0.292 5.292 13 C -0.049 4.049 14 H 0.119 0.881 15 C -0.061 4.061 16 O -0.293 6.293 17 C -0.065 4.065 18 C 0.018 3.982 19 H 0.090 0.910 20 O -0.341 6.341 21 H 0.072 0.928 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.166 0.834 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 18.247 -9.665 -0.337 20.651 hybrid contribution 0.743 0.674 0.550 1.144 sum 18.990 -8.991 0.213 21.012 Atomic orbital electron populations 1.69920 1.06303 1.26816 1.51373 1.25045 0.94730 0.99161 0.94652 0.86763 0.80293 0.83637 0.78470 1.20302 1.21436 1.19119 1.21161 0.89528 0.94478 1.50498 0.91004 1.19546 0.97186 0.92264 0.96088 1.21435 0.90892 0.99652 1.01734 1.22273 0.97964 0.87483 0.99790 1.60283 1.03739 1.14546 1.50589 1.23203 0.90682 0.96309 0.94715 0.88097 1.24438 0.85089 0.98724 0.97878 1.88874 1.29891 1.50364 1.60157 1.24064 0.99431 0.92177 0.90807 1.23154 0.87361 0.89436 0.98295 0.90957 1.86690 1.38729 1.23189 1.85482 0.92787 0.97060 0.96855 0.92966 0.91838 0.91440 0.95760 0.83355 0.88723 0.91606 0.91591 0.89501 0.78173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.00 5.41 -26.74 -0.14 -2.15 16 11 C 0.05 0.87 5.55 -3.83 -0.02 0.85 16 12 N -0.66 -9.52 5.62 -104.61 -0.59 -10.11 16 13 C 0.06 0.75 3.42 -65.70 -0.22 0.53 16 14 H 0.10 1.18 7.83 -51.93 -0.41 0.77 16 15 C 0.02 0.20 7.30 38.21 0.28 0.48 16 16 O -0.37 -4.54 11.52 -35.23 -0.41 -4.94 16 17 C 0.01 0.12 7.52 37.73 0.28 0.40 16 18 C 0.08 0.79 4.37 -25.20 -0.11 0.68 16 19 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 20 O -0.54 -5.72 12.50 -35.23 -0.44 -6.16 16 21 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.01 0.27 7.58 -51.93 -0.39 -0.13 16 23 H 0.01 0.32 7.19 -51.93 -0.37 -0.06 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.35 4.97 8.19 -39.30 -0.32 4.65 16 29 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.07 0.76 7.77 -51.93 -0.40 0.35 16 31 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 32 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.37 2.22 9.12 45.56 0.42 2.64 16 LS Contribution 273.44 15.07 4.12 4.12 Total: -1.00 -32.84 273.44 -6.13 -38.97 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.44 Total: 1.62 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.48 Total: -13.25 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.19 Total: -37.70 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.85 Total: -11.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.84 -6.13 -38.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323901514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.635 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds