Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99844 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.80727 * 328.62569 * 13 12 11 15 15 C 1.54993 * 110.90734 * 92.29740 * 13 12 11 16 16 O 1.44376 * 103.49641 * 155.22253 * 15 13 12 17 17 C 1.43753 * 106.96862 * 319.93722 * 16 15 13 18 18 C 1.54099 * 107.29706 * 26.51261 * 17 16 15 19 19 H 1.08996 * 110.59643 * 116.69957 * 18 17 16 20 20 O 1.42892 * 110.48656 * 239.29756 * 18 17 16 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 27 27 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 28 28 H 1.00893 * 111.00113 * 303.94754 * 12 11 10 29 29 H 1.09011 * 110.61592 * 273.72313 * 15 13 12 30 30 H 1.08996 * 110.62102 * 36.71391 * 15 13 12 31 31 H 1.09000 * 109.87679 * 267.08469 * 17 16 15 32 32 H 1.09008 * 109.87452 * 145.93953 * 17 16 15 33 33 H 0.96709 * 113.99925 * 294.76272 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 7.5096 -4.0607 0.0282 14 1 7.9221 -3.2023 -0.5019 15 6 8.0549 -4.1313 1.4773 16 8 9.3505 -4.7486 1.3201 17 6 9.2046 -5.7851 0.3348 18 6 8.0294 -5.3867 -0.5788 19 1 8.3744 -5.2292 -1.6006 20 8 7.0087 -6.3862 -0.5452 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 3.6545 -3.1486 0.9003 25 1 3.6618 -3.1522 -0.8796 26 1 5.9188 -2.1245 -0.8715 27 1 5.9108 -2.1211 0.9084 28 1 5.6621 -4.5367 0.8023 29 1 8.1549 -3.1310 1.8989 30 1 7.4086 -4.7488 2.1010 31 1 8.9880 -6.7344 0.8249 32 1 10.1190 -5.8693 -0.2527 33 1 7.2802 -7.2382 -0.9134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323901514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -126.933634 kcal Electronic energy + Delta-G solvation = -14411.638799 eV Core-core repulsion = 11856.958383 eV Total energy + Delta-G solvation = -2554.680416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81945 -37.43644 -36.92693 -35.31863 -33.45166 -30.59993 -29.50503 -27.52335 -24.21096 -23.56337 -22.15769 -21.44516 -18.98484 -18.59072 -17.53662 -16.85477 -16.43835 -16.22447 -15.99180 -15.23403 -15.07601 -14.77919 -14.46875 -13.96425 -13.78278 -13.43807 -13.06834 -12.74043 -12.54846 -12.50101 -12.01179 -11.77907 -11.48490 -11.44279 -11.23701 -10.96356 -10.77440 -10.75733 -9.27562 -8.28813 -6.33343 1.36772 1.38862 1.50966 2.37230 2.66830 3.06494 3.32735 3.36221 3.57806 3.71861 3.99823 4.17573 4.23274 4.35421 4.39356 4.63171 4.64469 4.70895 4.74697 4.91134 4.93550 4.97021 5.11888 5.51267 5.61568 5.66794 5.71541 6.06405 6.29960 6.41621 6.75152 6.98054 7.31271 8.88420 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.059567 B = 0.005193 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.944076 B = 5390.497409 C = 5677.167079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.067 3.933 12 N -0.666 5.666 13 C 0.056 3.944 14 H 0.106 0.894 15 C 0.020 3.980 16 O -0.393 6.393 17 C 0.014 3.986 18 C 0.082 3.918 19 H 0.087 0.913 20 O -0.559 6.559 21 H 0.266 0.734 22 H 0.020 0.980 23 H 0.021 0.979 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.346 0.654 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.176 -9.700 -0.243 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.062 4.062 12 N -0.298 5.298 13 C -0.055 4.055 14 H 0.124 0.876 15 C -0.058 4.058 16 O -0.311 6.311 17 C -0.063 4.063 18 C 0.021 3.979 19 H 0.105 0.895 20 O -0.366 6.366 21 H 0.075 0.925 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.165 0.835 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 20.846 -9.147 -0.542 22.771 hybrid contribution -0.120 0.365 0.600 0.712 sum 20.726 -8.782 0.058 22.509 Atomic orbital electron populations 1.70083 1.08443 1.28207 1.52761 1.26092 0.95661 1.03759 0.94032 0.85580 0.79473 0.77817 0.79274 1.19051 1.20988 1.16774 1.21536 0.92367 0.93026 1.50393 0.95402 1.19492 0.93718 0.94964 0.96604 1.21255 0.94060 0.96925 1.00663 1.22013 0.94660 0.88946 1.00586 1.60222 1.05565 1.13210 1.50767 1.23327 0.88885 0.97884 0.95436 0.87568 1.24375 0.84979 0.98935 0.97515 1.88855 1.30034 1.51173 1.61067 1.24200 1.00130 0.91626 0.90375 1.23148 0.87226 0.88420 0.99086 0.89496 1.86635 1.39548 1.24518 1.85929 0.92493 0.96129 0.96038 0.93660 0.93436 0.90852 0.94684 0.83494 0.88313 0.92004 0.91001 0.87237 0.75927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 2 C 0.00 0.05 5.47 84.66 0.46 0.52 16 3 Si 0.96 44.69 27.47 68.60 1.88 46.57 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.54 -31.80 9.66 25.60 0.25 -31.55 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.63 5.41 30.59 0.17 -3.47 16 11 C 0.07 2.04 5.55 86.30 0.48 2.52 16 12 N -0.67 -18.16 5.62 -484.88 -2.72 -20.89 16 13 C 0.06 1.22 3.42 46.22 0.16 1.38 16 14 H 0.11 2.20 7.83 -2.39 -0.02 2.18 16 15 C 0.02 0.43 7.30 72.66 0.53 0.96 16 16 O -0.39 -8.66 11.52 -148.98 -1.72 -10.37 16 17 C 0.01 0.21 7.52 72.35 0.54 0.76 16 18 C 0.08 1.44 4.37 31.59 0.14 1.58 16 19 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 20 O -0.56 -10.82 12.50 -148.98 -1.86 -12.68 16 21 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 22 H 0.02 0.93 7.58 -2.38 -0.02 0.92 16 23 H 0.02 0.98 7.19 -2.39 -0.02 0.96 16 24 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.35 9.54 8.19 -89.70 -0.73 8.81 16 29 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.06 1.34 7.77 -2.39 -0.02 1.32 16 31 H 0.07 1.05 7.97 -2.39 -0.02 1.03 16 32 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.39 3.84 9.12 -74.05 -0.68 3.17 16 Total: -1.00 -70.92 273.44 -1.64 -72.56 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.37 Total: 13.31 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 2.85 Total: -27.65 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -2.43 Total: -81.73 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -3.58 Total: -23.06 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -70.92 -1.64 -72.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323901514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.378 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds