Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47557 * 2 1 4 4 C 1.36936 * 120.00379 * 272.05505 * 3 2 1 5 5 H 1.07995 * 120.00163 * 184.40865 * 4 3 2 6 6 C 1.38813 * 119.99728 * 4.41254 * 4 3 2 7 7 N 1.31623 * 120.00088 * 26.99291 * 6 4 3 8 8 Si 1.86803 * 120.00186 * 206.99369 * 6 4 3 9 9 H 1.48498 * 109.46910 * 59.99616 * 8 6 4 10 10 H 1.48499 * 109.47043 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46912 * 300.00274 * 8 6 4 12 12 C 1.46501 * 119.99706 * 92.05243 * 3 2 1 13 13 C 1.53001 * 109.47076 * 84.54659 * 12 3 2 14 14 C 1.52996 * 113.56855 * 43.12384 * 13 12 3 15 15 O 1.42896 * 109.47344 * 200.43582 * 14 13 12 16 16 C 1.53360 * 114.56712 * 177.40349 * 13 12 3 17 17 O 1.43350 * 88.44863 * 86.60322 * 16 13 12 18 18 C 1.43344 * 88.32245 * 28.15243 * 17 16 13 19 19 H 1.09001 * 109.47339 * 293.10481 * 1 2 3 20 20 H 1.09005 * 109.46804 * 53.10070 * 1 2 3 21 21 H 1.08993 * 109.47489 * 173.09471 * 1 2 3 22 22 H 1.09005 * 109.47000 * 240.00136 * 2 1 3 23 23 H 1.09002 * 109.47032 * 120.00382 * 2 1 3 24 24 H 0.96996 * 120.00266 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47329 * 324.53966 * 12 3 2 26 26 H 1.09003 * 109.46838 * 204.54240 * 12 3 2 27 27 H 1.09001 * 109.47208 * 320.43389 * 14 13 12 28 28 H 1.09000 * 109.47284 * 80.43301 * 14 13 12 29 29 H 0.96701 * 114.00434 * 180.02562 * 15 14 13 30 30 H 1.09002 * 113.39573 * 331.70850 * 16 13 12 31 31 H 1.08997 * 113.43549 * 201.50747 * 16 13 12 32 32 H 1.09002 * 113.39647 * 86.74419 * 18 17 16 33 33 H 1.09000 * 113.39556 * 216.95679 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2066 2.0409 -1.1851 5 1 2.6336 3.0329 -1.1890 6 6 1.8485 1.4347 -2.3814 7 7 0.8924 0.5302 -2.4005 8 14 2.7235 1.9024 -3.9642 9 1 4.1734 1.6094 -3.8334 10 1 2.1601 1.1174 -5.0918 11 1 2.5330 3.3518 -4.2253 12 6 2.3054 2.0565 1.2680 13 6 3.7210 1.7004 1.7264 14 6 4.7544 1.7278 0.5985 15 8 5.8932 0.9520 0.9769 16 6 4.1675 2.3977 3.0173 17 8 3.5587 1.3317 3.7576 18 6 3.8053 0.4704 2.6386 19 1 -0.3634 0.4033 0.9452 20 1 -0.3633 0.6171 -0.8219 21 1 -0.3634 -1.0201 -0.1235 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.6419 0.1068 -3.2365 25 1 1.5874 1.7343 2.0220 26 1 2.2286 3.1351 1.1306 27 1 4.3149 1.3101 -0.3072 28 1 5.0615 2.7569 0.4120 29 1 6.5908 0.9252 0.3077 30 1 3.6878 3.3636 3.1757 31 1 5.2503 2.4421 3.1338 32 1 4.7936 0.0110 2.6555 33 1 3.0081 -0.2525 2.4650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379233001.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -44.623986 kcal Electronic energy + Delta-G solvation = -15720.198241 eV Core-core repulsion = 13169.087039 eV Total energy + Delta-G solvation = -2551.111202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97532 -37.93863 -37.18853 -33.70834 -32.18307 -30.54499 -27.35818 -27.13558 -25.95328 -24.89147 -22.38917 -19.62098 -18.65644 -18.00949 -17.22654 -17.00531 -16.83474 -16.40835 -15.53887 -15.21134 -15.03103 -14.15287 -13.93020 -13.70888 -13.42929 -13.15669 -12.82724 -12.62670 -12.53524 -12.35358 -12.00765 -11.78916 -11.44983 -11.28612 -11.19896 -10.68191 -10.51710 -10.25176 -8.81035 -7.73857 -5.06348 1.50772 1.55066 1.59334 2.55919 3.04234 3.15566 3.33982 3.51477 3.81792 4.06316 4.36228 4.48008 4.55778 4.58702 4.68806 4.75758 4.93789 4.99478 5.03501 5.12679 5.18908 5.20422 5.25616 5.35739 5.43228 5.65940 5.79822 6.26120 6.35752 6.97280 7.25979 7.94926 8.37467 9.24410 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.011635 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.393174 B = 2406.009348 C = 2928.122150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.180 3.820 3 N -0.604 5.604 4 C -0.251 4.251 5 H 0.078 0.922 6 C -0.047 4.047 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.282 1.282 10 H -0.303 1.303 11 H -0.282 1.282 12 C 0.179 3.821 13 C -0.142 4.142 14 C 0.096 3.904 15 O -0.587 6.587 16 C 0.047 3.953 17 O -0.394 6.394 18 C 0.048 3.952 19 H 0.012 0.988 20 H 0.071 0.929 21 H 0.027 0.973 22 H 0.046 0.954 23 H 0.022 0.978 24 H 0.244 0.756 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.392 0.608 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 2.063 5.873 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.055 3.945 3 N -0.326 5.326 4 C -0.380 4.380 5 H 0.096 0.904 6 C -0.242 4.242 7 N -0.560 5.560 8 Si 0.775 3.225 9 H -0.209 1.209 10 H -0.230 1.230 11 H -0.209 1.209 12 C 0.052 3.948 13 C -0.145 4.145 14 C 0.019 3.981 15 O -0.395 6.395 16 C -0.030 4.030 17 O -0.314 6.314 18 C -0.029 4.029 19 H 0.031 0.969 20 H 0.090 0.910 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.241 0.759 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.773 1.871 6.535 9.596 hybrid contribution 0.449 0.122 -1.691 1.754 sum 7.222 1.993 4.844 8.922 Atomic orbital electron populations 1.22245 0.98843 0.99407 0.99076 1.20549 0.92767 0.84521 0.96709 1.44295 1.76037 1.10974 1.01276 1.19408 1.34121 1.00247 0.84185 0.90383 1.25284 0.98775 1.00395 0.99750 1.70414 1.27663 1.32616 1.25319 0.85656 0.79178 0.77121 0.80515 1.20855 1.22988 1.20856 1.20418 0.90753 0.96397 0.87240 1.23946 0.98315 0.97478 0.94795 1.21791 0.85159 0.94252 0.96941 1.86292 1.30639 1.74304 1.48280 1.23817 0.98840 0.92658 0.87730 1.89743 1.79085 1.24412 1.38117 1.23628 1.01358 0.94332 0.83533 0.96911 0.91021 0.95379 0.93611 0.95965 0.94631 0.93790 0.92155 0.92384 0.93176 0.75899 0.88632 0.89310 0.89228 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 9.46 71.98 0.68 -5.71 16 2 C 0.18 8.47 5.69 86.38 0.49 8.96 16 3 N -0.60 -27.88 1.83 -702.01 -1.28 -29.17 16 4 C -0.25 -12.50 7.89 84.03 0.66 -11.84 16 5 H 0.08 3.77 7.95 -2.91 -0.02 3.75 16 6 C -0.05 -2.44 4.91 84.86 0.42 -2.03 16 7 N -0.91 -50.00 8.13 21.65 0.18 -49.83 16 8 Si 0.95 42.40 29.63 68.60 2.03 44.44 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.18 6.97 5.33 86.38 0.46 7.43 16 13 C -0.14 -4.83 1.40 -51.94 -0.07 -4.90 16 14 C 0.10 3.20 6.47 71.98 0.47 3.66 16 15 O -0.59 -17.02 11.83 -148.98 -1.76 -18.78 16 16 C 0.05 1.37 7.87 63.84 0.50 1.87 16 17 O -0.39 -13.70 12.61 -148.98 -1.88 -15.58 16 18 C 0.05 1.64 7.63 63.84 0.49 2.13 16 19 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 20 H 0.07 3.84 5.97 -2.38 -0.01 3.82 16 21 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 2.41 6.22 -2.38 -0.01 2.40 16 23 H 0.02 0.96 6.33 -2.39 -0.02 0.95 16 24 H 0.24 13.27 8.31 -92.71 -0.77 12.50 16 25 H 0.04 1.74 7.92 -2.39 -0.02 1.72 16 26 H 0.06 2.27 7.99 -2.39 -0.02 2.25 16 27 H 0.06 2.35 5.78 -2.39 -0.01 2.33 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.39 7.99 9.12 -74.06 -0.68 7.32 16 30 H 0.10 2.46 8.13 -2.39 -0.02 2.45 16 31 H 0.09 2.38 8.05 -2.39 -0.02 2.36 16 32 H 0.09 2.98 6.77 -2.39 -0.02 2.97 16 33 H 0.07 2.50 6.43 -2.39 -0.02 2.49 16 Total: -1.00 -57.25 261.38 1.80 -55.44 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.43 Total: 13.89 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.09 Total: -0.42 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.11 Total: -78.99 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -3.64 Total: -34.35 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.44 kcal Total: -57.25 1.80 -55.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379233001.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.817 kcal (2) G-P(sol) polarization free energy of solvation -57.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds