Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47426 * 2 1 4 4 C 1.36932 * 120.00209 * 269.65574 * 3 2 1 5 5 H 1.08005 * 119.99764 * 321.99998 * 4 3 2 6 6 C 1.38814 * 120.00442 * 141.99983 * 4 3 2 7 7 N 1.31614 * 120.00423 * 157.11715 * 6 4 3 8 8 Si 1.86798 * 119.99625 * 337.11173 * 6 4 3 9 9 H 1.48499 * 109.46992 * 95.69837 * 8 6 4 10 10 H 1.48497 * 109.47402 * 215.69879 * 8 6 4 11 11 H 1.48499 * 109.47277 * 335.69978 * 8 6 4 12 12 C 1.46499 * 119.99983 * 89.65348 * 3 2 1 13 13 C 1.52999 * 109.47053 * 90.00001 * 12 3 2 14 14 H 1.08995 * 109.64919 * 304.73537 * 13 12 3 15 15 C 1.53265 * 109.56040 * 184.45877 * 13 12 3 16 16 C 1.53262 * 108.84583 * 185.63853 * 15 13 12 17 17 O 1.43089 * 108.94018 * 54.52707 * 16 15 13 18 18 C 1.42969 * 113.77031 * 302.02678 * 17 16 15 19 19 O 1.42960 * 109.47097 * 58.80049 * 18 17 16 20 20 H 1.08999 * 109.47019 * 60.00013 * 1 2 3 21 21 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46664 * 299.99668 * 1 2 3 23 23 H 1.09003 * 109.46944 * 239.99661 * 2 1 3 24 24 H 1.08999 * 109.47117 * 120.00535 * 2 1 3 25 25 H 0.97002 * 120.00476 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47190 * 330.00314 * 12 3 2 27 27 H 1.09001 * 109.47091 * 210.00136 * 12 3 2 28 28 H 1.08998 * 109.57453 * 65.82699 * 15 13 12 29 29 H 1.09000 * 109.67834 * 305.51055 * 15 13 12 30 30 H 1.08991 * 109.55685 * 294.68450 * 16 15 13 31 31 H 1.09004 * 109.55534 * 174.36117 * 16 15 13 32 32 H 1.08994 * 109.47014 * 298.79556 * 18 17 16 33 33 H 1.09007 * 109.46911 * 178.79666 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2534 2.0243 -1.1858 5 1 2.6782 1.4834 -2.0185 6 6 1.9456 3.3714 -1.3177 7 7 2.5494 4.0978 -2.2342 8 14 0.6741 4.1532 -0.1946 9 1 1.3589 4.8011 0.9528 10 1 -0.0952 5.1729 -0.9518 11 1 -0.2522 3.1071 0.3083 12 6 2.2553 2.0743 1.2687 13 6 3.6978 1.8347 1.7191 14 1 3.8920 0.7635 1.7724 15 6 3.9159 2.4650 3.0989 16 6 5.3972 2.3398 3.4718 17 8 6.1893 2.9118 2.4264 18 6 5.9751 2.3111 1.1468 19 8 4.5979 2.4387 0.7849 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.3341 5.0391 -2.3266 26 1 1.5703 1.6917 2.0252 27 1 2.0892 3.1432 1.1353 28 1 3.3078 1.9442 3.8386 29 1 3.6342 3.5176 3.0703 30 1 5.6556 1.2878 3.5916 31 1 5.5849 2.8719 4.4045 32 1 6.2427 1.2555 1.1916 33 1 6.5943 2.8117 0.4022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379384721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = -69.378631 kcal Electronic energy + Delta-G solvation = -15661.545644 eV Core-core repulsion = 13109.361000 eV Total energy + Delta-G solvation = -2552.184644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39272 -36.41479 -34.81267 -32.44428 -31.76410 -29.63108 -27.13558 -25.21742 -23.88398 -22.98500 -20.64100 -19.92704 -16.86157 -16.71955 -16.12117 -15.51765 -14.84434 -14.76945 -14.42373 -13.73724 -13.26974 -13.10330 -12.68806 -12.35149 -11.88976 -11.72155 -11.34944 -11.16333 -10.92903 -10.77612 -10.70229 -10.42490 -10.00496 -9.87457 -9.52844 -9.40899 -9.05235 -8.35974 -6.75056 -5.84825 -3.24857 3.38939 3.52913 3.57065 4.05012 4.38316 4.64557 4.85059 5.09772 5.20990 5.33022 5.44578 5.48931 5.68942 5.72531 5.85460 5.92736 6.02243 6.09908 6.24172 6.29202 6.35990 6.41602 6.49932 6.74570 6.83512 7.07346 7.22522 7.86394 8.18714 8.51755 9.08654 9.85456 10.23075 11.31537 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.027520 B = 0.012729 C = 0.010971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.203904 B = 2199.118586 C = 2551.672275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.144 3.856 3 N -0.600 5.600 4 C -0.253 4.253 5 H 0.075 0.925 6 C 0.044 3.956 7 N -0.897 5.897 8 Si 0.868 3.132 9 H -0.287 1.287 10 H -0.303 1.303 11 H -0.269 1.269 12 C 0.144 3.856 13 C 0.072 3.928 14 H 0.049 0.951 15 C -0.191 4.191 16 C 0.062 3.938 17 O -0.405 6.405 18 C 0.217 3.783 19 O -0.344 6.344 20 H 0.056 0.944 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.260 0.740 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -5.880 10.618 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.322 5.322 4 C -0.382 4.382 5 H 0.093 0.907 6 C -0.156 4.156 7 N -0.538 5.538 8 Si 0.698 3.302 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.194 1.194 12 C 0.017 3.983 13 C 0.011 3.989 14 H 0.067 0.933 15 C -0.230 4.230 16 C -0.015 4.015 17 O -0.326 6.326 18 C 0.102 3.898 19 O -0.263 6.263 20 H 0.076 0.924 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.395 -5.499 10.343 11.957 hybrid contribution -0.764 0.279 0.857 1.181 sum 1.630 -5.221 11.200 12.464 Atomic orbital electron populations 1.22350 0.99738 0.99114 1.01663 1.20875 0.91724 0.86720 0.98831 1.44084 1.75029 1.11170 1.01868 1.18596 1.35843 0.93243 0.90517 0.90747 1.25348 0.97599 0.96660 0.96015 1.69878 1.40923 1.06698 1.36320 0.87058 0.83899 0.78828 0.80366 1.21540 1.23121 1.19363 1.21277 0.90186 0.98301 0.88493 1.23035 0.94133 0.94926 0.86804 0.93297 1.22865 0.97283 1.03507 0.99336 1.22545 0.90328 0.97724 0.90901 1.88055 1.63761 1.62334 1.18458 1.23971 0.85705 0.96088 0.84018 1.88536 1.14272 1.77547 1.45935 0.92442 0.94340 0.94154 0.93006 0.94807 0.93012 0.92899 0.91923 0.90473 0.90271 0.93449 0.89150 0.94803 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 37.16 0.38 -2.73 16 2 C 0.14 2.86 6.39 -4.05 -0.03 2.84 16 3 N -0.60 -14.34 2.05 -173.25 -0.35 -14.69 16 4 C -0.25 -7.18 9.41 -15.06 -0.14 -7.32 16 5 H 0.07 2.30 8.06 -52.48 -0.42 1.87 16 6 C 0.04 1.30 5.29 -17.43 -0.09 1.21 16 7 N -0.90 -28.11 13.97 55.49 0.78 -27.33 16 8 Si 0.87 22.71 25.10 -169.99 -4.27 18.44 16 9 H -0.29 -7.41 6.68 56.52 0.38 -7.03 16 10 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.14 3.15 4.23 -4.04 -0.02 3.14 16 13 C 0.07 1.40 2.99 -26.60 -0.08 1.32 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.19 -3.04 5.64 -26.46 -0.15 -3.19 16 16 C 0.06 0.89 6.96 37.29 0.26 1.15 16 17 O -0.41 -7.10 10.90 -59.03 -0.64 -7.75 16 18 C 0.22 3.91 7.82 101.05 0.79 4.70 16 19 O -0.34 -7.80 10.03 -59.03 -0.59 -8.40 16 20 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 23 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 24 H 0.03 0.58 8.07 -51.93 -0.42 0.17 16 25 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 27 H 0.06 1.55 3.38 -51.93 -0.18 1.38 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 267.25 15.07 4.03 4.03 Total: -1.00 -32.41 267.25 -5.37 -37.78 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.24 Total: -3.19 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 0.92 Total: 1.11 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.42 Total: -42.03 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -1.24 Total: -16.14 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.27 Total: 18.44 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.41 -5.37 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379384721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.600 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds