Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99838 * 2 1 4 4 H 1.48505 * 109.46900 * 240.00315 * 3 2 1 5 5 H 1.48498 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47052 * 120.00473 * 3 2 1 7 7 C 1.37879 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46687 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.46625 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99695 * 179.97438 * 11 10 9 13 13 C 1.50977 * 109.51152 * 85.10266 * 12 11 10 14 14 O 1.44222 * 113.00279 * 210.83474 * 13 12 11 15 15 C 1.43595 * 115.85898 * 318.66686 * 14 13 12 16 16 C 1.51009 * 111.51684 * 319.42652 * 15 14 13 17 17 O 1.43374 * 107.95472 * 92.73019 * 16 15 14 18 18 C 1.36958 * 117.69343 * 278.86219 * 17 16 15 19 19 H 0.97000 * 120.00105 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46966 * 60.00559 * 9 7 2 21 21 H 1.08994 * 109.47394 * 299.99944 * 9 7 2 22 22 H 1.08998 * 109.46999 * 60.00532 * 10 9 7 23 23 H 1.08994 * 109.47637 * 299.99967 * 10 9 7 24 24 H 1.00901 * 111.00083 * 56.05037 * 11 10 9 25 25 H 1.09002 * 109.51284 * 325.00088 * 12 11 10 26 26 H 1.09000 * 108.76441 * 331.83525 * 13 12 11 27 27 H 1.08993 * 108.76922 * 89.99686 * 13 12 11 28 28 H 1.08998 * 109.07391 * 198.90137 * 15 14 13 29 29 H 1.08998 * 109.02006 * 79.90938 * 15 14 13 30 30 H 1.09003 * 109.76696 * 333.11586 * 16 15 14 31 31 H 1.09001 * 109.76537 * 212.34377 * 16 15 14 32 32 H 1.09001 * 109.21890 * 300.51360 * 18 17 16 33 33 H 1.09001 * 109.18736 * 181.14838 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 2.8473 -6.3920 1.4159 14 8 4.1788 -6.9385 1.5074 15 6 4.5322 -7.8989 0.5001 16 6 3.3879 -8.8394 0.2058 17 8 2.6407 -8.2968 -0.8909 18 6 1.7333 -7.3086 -0.6158 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8904 24 1 0.8748 -4.9841 -0.7828 25 1 3.3186 -5.8288 -0.5910 26 1 2.8005 -5.4773 2.0069 27 1 2.1439 -7.1125 1.8330 28 1 5.3892 -8.4776 0.8447 29 1 4.8034 -7.3712 -0.4142 30 1 2.7461 -8.9248 1.0827 31 1 3.7776 -9.8211 -0.0635 32 1 0.9925 -7.6875 0.0883 33 1 1.2334 -7.0142 -1.5386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379386589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = -92.320049 kcal Electronic energy + Delta-G solvation = -14751.662370 eV Core-core repulsion = 12198.482911 eV Total energy + Delta-G solvation = -2553.179458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22648 -36.74615 -36.09057 -33.18678 -31.24883 -29.63908 -27.45716 -26.66134 -23.89834 -22.39472 -20.65322 -20.37339 -17.33031 -17.01230 -16.63007 -16.22501 -15.50183 -14.70497 -14.51897 -14.32350 -13.73630 -13.44380 -13.17257 -12.70392 -12.30952 -12.10935 -11.57457 -11.18310 -11.06403 -10.91897 -10.61410 -10.52308 -10.15668 -9.84556 -9.48700 -9.34028 -9.16500 -8.36623 -7.98708 -6.00919 -4.03742 3.33619 3.37789 3.40384 3.52961 3.73624 4.41932 4.55828 4.63839 4.79760 4.90634 4.99265 5.02109 5.28455 5.35141 5.51644 5.61431 5.71522 5.74885 5.91611 6.13193 6.26411 6.35801 6.92898 7.03593 7.20939 7.46421 7.66875 7.75469 7.87529 8.04002 8.41017 9.02975 9.60239 11.10456 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.059479 B = 0.005570 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.640687 B = 5026.035481 C = 5280.304773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.678 5.678 12 C 0.013 3.987 13 C 0.065 3.935 14 O -0.390 6.390 15 C 0.025 3.975 16 C 0.029 3.971 17 O -0.382 6.382 18 C 0.069 3.931 19 H 0.261 0.739 20 H 0.014 0.986 21 H 0.026 0.974 22 H 0.060 0.940 23 H 0.018 0.982 24 H 0.341 0.659 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -16.350 -0.085 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.312 5.312 12 C -0.098 4.098 13 C -0.012 4.012 14 O -0.309 6.309 15 C -0.052 4.052 16 C -0.047 4.047 17 O -0.299 6.299 18 C -0.009 4.009 19 H 0.071 0.929 20 H 0.033 0.967 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.036 0.964 24 H 0.160 0.840 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.100 -16.265 0.568 17.055 hybrid contribution 0.550 1.085 -0.825 1.470 sum 5.649 -15.180 -0.258 16.199 Atomic orbital electron populations 1.69959 1.06040 1.26759 1.50505 1.24994 0.94843 0.99220 0.95204 0.86637 0.79565 0.83036 0.78637 1.20275 1.21234 1.20185 1.21129 0.92979 0.90975 1.51141 0.92784 1.19067 0.93956 0.90343 0.97787 1.22270 0.97036 0.88036 0.98957 1.60536 1.19194 1.01573 1.49913 1.22793 0.96766 0.93315 0.96906 1.22524 0.82749 0.99274 0.96663 1.88285 1.32654 1.58646 1.51347 1.23049 0.97754 0.91146 0.93201 1.23119 0.93453 0.97580 0.90538 1.86542 1.55103 1.53308 1.34956 1.22133 0.90454 0.86925 1.01372 0.92901 0.96728 0.95576 0.92110 0.96381 0.84038 0.92512 0.87826 0.93148 0.88650 0.91926 0.91571 0.87678 0.93242 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.06 1.37 5.35 -3.82 -0.02 1.35 16 11 N -0.68 -11.82 6.24 -106.91 -0.67 -12.49 16 12 C 0.01 0.20 2.26 -67.90 -0.15 0.05 16 13 C 0.06 0.95 5.90 36.14 0.21 1.17 16 14 O -0.39 -5.73 10.93 -35.23 -0.38 -6.12 16 15 C 0.03 0.29 6.39 36.16 0.23 0.52 16 16 C 0.03 0.29 6.48 36.16 0.23 0.53 16 17 O -0.38 -4.75 10.01 -22.88 -0.23 -4.98 16 18 C 0.07 0.87 5.89 37.99 0.22 1.09 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 1.31 7.42 -51.93 -0.39 0.92 16 23 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 24 H 0.34 5.59 8.17 -39.29 -0.32 5.27 16 25 H 0.06 0.93 6.95 -51.93 -0.36 0.57 16 26 H 0.10 1.71 7.17 -51.93 -0.37 1.34 16 27 H 0.05 0.68 6.64 -51.93 -0.34 0.33 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 30 H 0.07 0.66 6.87 -51.93 -0.36 0.30 16 31 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.59 7.75 -51.93 -0.40 0.18 16 33 H 0.10 1.15 7.84 -51.93 -0.41 0.74 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -30.78 266.18 -6.36 -37.15 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.98 Total: 0.30 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 0.17 Total: -8.42 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.07 Total: -38.69 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.61 Total: -11.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.78 -6.36 -37.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.175 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds