Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99838 * 2 1 4 4 H 1.48505 * 109.46900 * 240.00315 * 3 2 1 5 5 H 1.48498 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47052 * 120.00473 * 3 2 1 7 7 C 1.37879 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46687 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.46625 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99695 * 179.97438 * 11 10 9 13 13 C 1.50977 * 109.51152 * 85.10266 * 12 11 10 14 14 O 1.44222 * 113.00279 * 210.83474 * 13 12 11 15 15 C 1.43595 * 115.85898 * 318.66686 * 14 13 12 16 16 C 1.51009 * 111.51684 * 319.42652 * 15 14 13 17 17 O 1.43374 * 107.95472 * 92.73019 * 16 15 14 18 18 C 1.36958 * 117.69343 * 278.86219 * 17 16 15 19 19 H 0.97000 * 120.00105 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46966 * 60.00559 * 9 7 2 21 21 H 1.08994 * 109.47394 * 299.99944 * 9 7 2 22 22 H 1.08998 * 109.46999 * 60.00532 * 10 9 7 23 23 H 1.08994 * 109.47637 * 299.99967 * 10 9 7 24 24 H 1.00901 * 111.00083 * 56.05037 * 11 10 9 25 25 H 1.09002 * 109.51284 * 325.00088 * 12 11 10 26 26 H 1.09000 * 108.76441 * 331.83525 * 13 12 11 27 27 H 1.08993 * 108.76922 * 89.99686 * 13 12 11 28 28 H 1.08998 * 109.07391 * 198.90137 * 15 14 13 29 29 H 1.08998 * 109.02006 * 79.90938 * 15 14 13 30 30 H 1.09003 * 109.76696 * 333.11586 * 16 15 14 31 31 H 1.09001 * 109.76537 * 212.34377 * 16 15 14 32 32 H 1.09001 * 109.21890 * 300.51360 * 18 17 16 33 33 H 1.09001 * 109.18736 * 181.14838 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 2.8473 -6.3920 1.4159 14 8 4.1788 -6.9385 1.5074 15 6 4.5322 -7.8989 0.5001 16 6 3.3879 -8.8394 0.2058 17 8 2.6407 -8.2968 -0.8909 18 6 1.7333 -7.3086 -0.6158 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8904 24 1 0.8748 -4.9841 -0.7828 25 1 3.3186 -5.8288 -0.5910 26 1 2.8005 -5.4773 2.0069 27 1 2.1439 -7.1125 1.8330 28 1 5.3892 -8.4776 0.8447 29 1 4.8034 -7.3712 -0.4142 30 1 2.7461 -8.9248 1.0827 31 1 3.7776 -9.8211 -0.0635 32 1 0.9925 -7.6875 0.0883 33 1 1.2334 -7.0142 -1.5386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379386589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = -115.606713 kcal Electronic energy + Delta-G solvation = -14752.672155 eV Core-core repulsion = 12198.482911 eV Total energy + Delta-G solvation = -2554.189244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24838 -37.83464 -37.50715 -35.19828 -32.79039 -30.90076 -29.00853 -27.74190 -25.83000 -23.37209 -22.44777 -21.60749 -18.60936 -18.37547 -17.90396 -17.61587 -16.68520 -16.48077 -15.91463 -15.53860 -15.10093 -14.85704 -14.44490 -14.12512 -14.07117 -13.34094 -13.16786 -12.88332 -12.57897 -12.42757 -12.08349 -11.96115 -11.62894 -11.50380 -11.35638 -10.77241 -10.57980 -10.50299 -9.46424 -8.21740 -6.33344 1.39943 1.42968 1.51035 2.38888 2.61379 2.67639 3.11788 3.34053 3.53259 3.76395 3.92874 4.05957 4.17612 4.30225 4.40829 4.49077 4.55756 4.63583 4.74338 4.83772 4.88250 4.95817 5.06713 5.39914 5.62504 5.71899 5.95541 6.06973 6.18747 6.39303 6.48713 6.82774 7.35933 8.90071 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.059479 B = 0.005570 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.640687 B = 5026.035481 C = 5280.304773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.033 3.967 10 C 0.085 3.915 11 N -0.678 5.678 12 C 0.018 3.982 13 C 0.067 3.933 14 O -0.409 6.409 15 C 0.019 3.981 16 C 0.028 3.972 17 O -0.391 6.391 18 C 0.077 3.923 19 H 0.265 0.735 20 H -0.004 1.004 21 H -0.002 1.002 22 H 0.055 0.945 23 H 0.017 0.983 24 H 0.348 0.652 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.061 0.939 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -17.262 -0.240 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.043 4.043 11 N -0.312 5.312 12 C -0.093 4.093 13 C -0.009 4.009 14 O -0.329 6.329 15 C -0.057 4.057 16 C -0.048 4.048 17 O -0.308 6.308 18 C -0.002 4.002 19 H 0.074 0.926 20 H 0.014 0.986 21 H 0.016 0.984 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.167 0.833 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.050 -17.203 0.408 18.241 hybrid contribution 0.279 1.289 -0.769 1.526 sum 6.329 -15.915 -0.361 17.131 Atomic orbital electron populations 1.70086 1.07734 1.27946 1.51165 1.25937 0.95766 1.03248 0.94485 0.85496 0.78293 0.78074 0.79144 1.19201 1.20578 1.19289 1.21564 0.93445 0.92365 1.51355 0.92450 1.18906 0.94189 0.91911 0.95429 1.21837 0.95654 0.88275 0.98579 1.60389 1.19478 1.00940 1.50410 1.22826 0.95924 0.93349 0.97227 1.22416 0.83559 0.98895 0.96060 1.88254 1.32369 1.59700 1.52540 1.23290 0.99370 0.90891 0.92139 1.23336 0.92748 0.98411 0.90271 1.86543 1.55229 1.52840 1.36202 1.22061 0.90419 0.85829 1.01845 0.92640 0.98567 0.98357 0.92695 0.96481 0.83274 0.93954 0.90219 0.91499 0.85821 0.93166 0.91090 0.84387 0.92070 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.77 5.23 29.85 0.16 1.93 16 10 C 0.09 3.67 5.35 86.30 0.46 4.13 16 11 N -0.68 -23.64 6.24 -492.17 -3.07 -26.71 16 12 C 0.02 0.52 2.26 44.79 0.10 0.62 16 13 C 0.07 1.95 5.90 71.32 0.42 2.37 16 14 O -0.41 -11.57 10.93 -148.98 -1.63 -13.20 16 15 C 0.02 0.39 6.39 71.33 0.46 0.85 16 16 C 0.03 0.48 6.48 71.33 0.46 0.94 16 17 O -0.39 -8.79 10.01 -104.78 -1.05 -9.84 16 18 C 0.08 1.79 5.89 72.52 0.43 2.21 16 19 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 20 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 22 H 0.05 2.41 7.42 -2.39 -0.02 2.39 16 23 H 0.02 0.73 8.05 -2.39 -0.02 0.71 16 24 H 0.35 11.33 8.17 -89.69 -0.73 10.60 16 25 H 0.04 1.38 6.95 -2.39 -0.02 1.36 16 26 H 0.08 2.66 7.17 -2.39 -0.02 2.65 16 27 H 0.07 1.69 6.64 -2.39 -0.02 1.68 16 28 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.16 7.30 -2.39 -0.02 1.15 16 30 H 0.07 1.19 6.87 -2.39 -0.02 1.17 16 31 H 0.14 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 33 H 0.11 2.28 7.84 -2.39 -0.02 2.26 16 Total: -1.00 -66.02 266.18 0.11 -65.91 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.36 Total: 11.51 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.18 Total: -17.76 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.78 Total: -83.20 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -2.68 Total: -23.04 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.02 0.11 -65.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds