Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37104 * 120.00020 * 2 1 4 4 H 1.07996 * 120.00434 * 183.67674 * 3 2 1 5 5 C 1.38955 * 119.99528 * 3.67139 * 3 2 1 6 6 N 1.31405 * 120.00056 * 6.49130 * 5 3 2 7 7 Si 1.86798 * 119.99449 * 186.48452 * 5 3 2 8 8 H 1.48499 * 109.47206 * 90.00713 * 7 5 3 9 9 H 1.48502 * 109.46854 * 210.00228 * 7 5 3 10 10 H 1.48497 * 109.47796 * 330.00182 * 7 5 3 11 11 C 1.34775 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00103 * 183.93330 * 11 2 1 13 13 C 1.50697 * 119.99791 * 3.64809 * 11 2 1 14 14 C 1.53003 * 115.55230 * 285.30459 * 13 11 2 15 15 C 1.52998 * 109.47274 * 293.33074 * 14 13 11 16 16 F 1.39894 * 109.47102 * 175.89917 * 15 14 13 17 17 C 1.53000 * 117.49628 * 139.63819 * 13 11 2 18 18 C 1.52994 * 117.49803 * 70.97864 * 13 11 2 19 19 H 1.09002 * 109.47136 * 174.43875 * 1 2 3 20 20 H 1.09002 * 109.46815 * 294.43754 * 1 2 3 21 21 H 1.08998 * 109.47548 * 54.43845 * 1 2 3 22 22 H 0.96998 * 119.99639 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47013 * 53.33245 * 14 13 11 24 24 H 1.08995 * 109.47205 * 173.32839 * 14 13 11 25 25 H 1.08994 * 109.47128 * 295.90374 * 15 14 13 26 26 H 1.09002 * 109.47025 * 55.89750 * 15 14 13 27 27 H 1.08997 * 117.50170 * 359.97438 * 17 13 11 28 28 H 1.09004 * 117.49679 * 145.02468 * 17 13 11 29 29 H 1.08999 * 117.50006 * 214.98208 * 18 13 11 30 30 H 1.09004 * 117.50187 * 359.97108 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2288 1.1884 -0.0600 5 6 1.4578 2.3895 0.0771 6 7 0.1592 2.3877 0.2781 7 14 2.3727 4.0078 -0.1049 8 1 2.4011 4.4022 -1.5363 9 1 1.6814 5.0587 0.6843 10 1 3.7629 3.8494 0.3925 11 6 2.1389 -1.1672 -0.0005 12 8 3.3497 -1.1684 0.0715 13 6 1.3877 -2.4709 -0.0841 14 6 0.6702 -2.9024 1.1964 15 6 1.7045 -3.2262 2.2763 16 9 1.0487 -3.5303 3.4740 17 6 1.9787 -3.5712 -0.9678 18 6 0.7236 -2.8192 -1.4177 19 1 -0.3633 -1.0228 -0.0996 20 1 -0.3633 0.4252 0.9356 21 1 -0.3634 0.5976 -0.8360 22 1 -0.3243 3.2269 0.3322 23 1 0.0254 -2.0942 1.5416 24 1 0.0668 -3.7873 0.9943 25 1 2.3023 -4.0817 1.9620 26 1 2.3547 -2.3644 2.4267 27 1 2.9106 -3.3520 -1.4890 28 1 1.8559 -4.6026 -0.6371 29 1 -0.2243 -3.3561 -1.3828 30 1 0.8296 -2.1052 -2.2345 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379411853.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -55.890032 kcal Electronic energy + Delta-G solvation = -14948.921540 eV Core-core repulsion = 12273.861500 eV Total energy + Delta-G solvation = -2675.060039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.27097 -39.27349 -36.22512 -34.63303 -31.51104 -30.80168 -26.53018 -24.87060 -23.55635 -22.05736 -21.54262 -18.17683 -16.93673 -16.16457 -15.78355 -15.52230 -14.88229 -14.42768 -14.13441 -14.04290 -13.48769 -13.02018 -12.32804 -11.94858 -11.69562 -11.35226 -11.21138 -11.19169 -11.00424 -10.71157 -10.45167 -10.38257 -10.18891 -9.97946 -9.52188 -9.05738 -8.35444 -7.87039 -6.26313 -3.82805 3.13796 3.23106 3.28772 3.77052 3.99994 4.14060 4.76646 4.82190 5.06289 5.09235 5.26533 5.34630 5.51939 5.53832 5.71683 5.80951 5.91910 6.15669 6.27028 6.32310 6.39913 6.47601 6.53539 7.10319 7.41041 7.54513 8.05434 8.47035 9.16946 9.44037 9.98015 10.67941 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.009405 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.294047 B = 2976.495694 C = 3166.287772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.438 5.438 3 C -0.302 4.302 4 H 0.104 0.896 5 C 0.027 3.973 6 N -0.886 5.886 7 Si 0.931 3.069 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.467 3.533 12 O -0.594 6.594 13 C -0.133 4.133 14 C -0.107 4.107 15 C 0.063 3.937 16 F -0.225 7.225 17 C -0.153 4.153 18 C -0.163 4.163 19 H 0.030 0.970 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.266 0.734 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -7.952 -0.829 8.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.155 5.155 3 C -0.430 4.430 4 H 0.122 0.878 5 C -0.175 4.175 6 N -0.527 5.527 7 Si 0.758 3.242 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.254 3.746 12 O -0.481 6.481 13 C -0.136 4.136 14 C -0.145 4.145 15 C 0.009 3.991 16 F -0.207 7.207 17 C -0.190 4.190 18 C -0.200 4.200 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.139 -7.754 -0.737 8.077 hybrid contribution 0.088 0.919 -0.059 0.925 sum -2.051 -6.835 -0.796 7.180 Atomic orbital electron populations 1.21815 0.80212 0.96831 1.04139 1.43662 1.06157 1.04592 1.61098 1.19838 0.93345 0.81995 1.47813 0.87807 1.25319 0.95846 0.99746 0.96609 1.70163 1.06855 1.27148 1.48508 0.85842 0.79423 0.80666 0.78293 1.20357 1.20857 1.19377 1.18809 0.87152 0.83273 0.85353 1.90506 1.13908 1.86707 1.56931 1.21183 1.03455 0.96806 0.92201 1.21658 0.97545 1.02249 0.93019 1.21952 0.94682 1.02465 0.80043 1.92719 1.83731 1.95037 1.49183 1.22929 0.97931 0.95597 1.02570 1.23037 0.96734 1.03223 0.96999 0.95145 0.91157 0.91802 0.92335 0.89698 0.90825 0.90899 0.90029 0.88248 0.88815 0.88647 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.58 8.01 59.85 0.48 3.06 16 2 N -0.44 -11.26 3.03 -122.19 -0.37 -11.63 16 3 C -0.30 -8.45 9.56 -14.93 -0.14 -8.59 16 4 H 0.10 3.04 7.19 -52.49 -0.38 2.67 16 5 C 0.03 0.71 5.41 -17.47 -0.09 0.61 16 6 N -0.89 -23.28 9.52 55.50 0.53 -22.75 16 7 Si 0.93 20.83 29.56 -169.99 -5.02 15.81 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 11 C 0.47 11.30 6.20 -10.99 -0.07 11.24 16 12 O -0.59 -16.43 16.52 5.55 0.09 -16.34 16 13 C -0.13 -2.43 0.70 -155.66 -0.11 -2.54 16 14 C -0.11 -1.73 5.16 -26.73 -0.14 -1.87 16 15 C 0.06 1.05 7.48 37.16 0.28 1.32 16 16 F -0.23 -3.86 17.36 2.25 0.04 -3.82 16 17 C -0.15 -2.38 9.83 -26.69 -0.26 -2.64 16 18 C -0.16 -2.51 8.87 -26.70 -0.24 -2.75 16 19 H 0.03 0.58 4.49 -51.93 -0.23 0.35 16 20 H 0.07 1.71 6.99 -51.93 -0.36 1.34 16 21 H 0.06 1.53 7.13 -51.93 -0.37 1.16 16 22 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 23 H 0.08 1.47 6.68 -51.93 -0.35 1.12 16 24 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.54 7.64 -51.93 -0.40 1.15 16 27 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 255.73 15.07 3.85 3.85 Total: -1.00 -30.01 255.73 -4.93 -34.94 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.75 Total: 2.09 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.29 Total: -2.15 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.16 Total: -34.38 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.01 -4.93 -34.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379411853.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.954 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds