Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37104 * 120.00020 * 2 1 4 4 H 1.07996 * 120.00434 * 183.67674 * 3 2 1 5 5 C 1.38955 * 119.99528 * 3.67139 * 3 2 1 6 6 N 1.31405 * 120.00056 * 6.49130 * 5 3 2 7 7 Si 1.86798 * 119.99449 * 186.48452 * 5 3 2 8 8 H 1.48499 * 109.47206 * 90.00713 * 7 5 3 9 9 H 1.48502 * 109.46854 * 210.00228 * 7 5 3 10 10 H 1.48497 * 109.47796 * 330.00182 * 7 5 3 11 11 C 1.34775 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00103 * 183.93330 * 11 2 1 13 13 C 1.50697 * 119.99791 * 3.64809 * 11 2 1 14 14 C 1.53003 * 115.55230 * 285.30459 * 13 11 2 15 15 C 1.52998 * 109.47274 * 293.33074 * 14 13 11 16 16 F 1.39894 * 109.47102 * 175.89917 * 15 14 13 17 17 C 1.53000 * 117.49628 * 139.63819 * 13 11 2 18 18 C 1.52994 * 117.49803 * 70.97864 * 13 11 2 19 19 H 1.09002 * 109.47136 * 174.43875 * 1 2 3 20 20 H 1.09002 * 109.46815 * 294.43754 * 1 2 3 21 21 H 1.08998 * 109.47548 * 54.43845 * 1 2 3 22 22 H 0.96998 * 119.99639 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47013 * 53.33245 * 14 13 11 24 24 H 1.08995 * 109.47205 * 173.32839 * 14 13 11 25 25 H 1.08994 * 109.47128 * 295.90374 * 15 14 13 26 26 H 1.09002 * 109.47025 * 55.89750 * 15 14 13 27 27 H 1.08997 * 117.50170 * 359.97438 * 17 13 11 28 28 H 1.09004 * 117.49679 * 145.02468 * 17 13 11 29 29 H 1.08999 * 117.50006 * 214.98208 * 18 13 11 30 30 H 1.09004 * 117.50187 * 359.97108 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2288 1.1884 -0.0600 5 6 1.4578 2.3895 0.0771 6 7 0.1592 2.3877 0.2781 7 14 2.3727 4.0078 -0.1049 8 1 2.4011 4.4022 -1.5363 9 1 1.6814 5.0587 0.6843 10 1 3.7629 3.8494 0.3925 11 6 2.1389 -1.1672 -0.0005 12 8 3.3497 -1.1684 0.0715 13 6 1.3877 -2.4709 -0.0841 14 6 0.6702 -2.9024 1.1964 15 6 1.7045 -3.2262 2.2763 16 9 1.0487 -3.5303 3.4740 17 6 1.9787 -3.5712 -0.9678 18 6 0.7236 -2.8192 -1.4177 19 1 -0.3633 -1.0228 -0.0996 20 1 -0.3633 0.4252 0.9356 21 1 -0.3634 0.5976 -0.8360 22 1 -0.3243 3.2269 0.3322 23 1 0.0254 -2.0942 1.5416 24 1 0.0668 -3.7873 0.9943 25 1 2.3023 -4.0817 1.9620 26 1 2.3547 -2.3644 2.4267 27 1 2.9106 -3.3520 -1.4890 28 1 1.8559 -4.6026 -0.6371 29 1 -0.2243 -3.3561 -1.3828 30 1 0.8296 -2.1052 -2.2345 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379411853.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -74.457211 kcal Electronic energy + Delta-G solvation = -14949.726673 eV Core-core repulsion = 12273.861500 eV Total energy + Delta-G solvation = -2675.865173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.60391 -40.97042 -37.82797 -36.63760 -33.52648 -32.09029 -28.47656 -26.73602 -25.01887 -23.38380 -23.07366 -19.86566 -18.94196 -17.76871 -17.19777 -17.05377 -16.54684 -15.99205 -15.85307 -15.63095 -15.14609 -14.68111 -13.80226 -13.67287 -13.46335 -13.06070 -12.85710 -12.74275 -12.52020 -12.38060 -12.18250 -12.09244 -11.73820 -11.32891 -11.06179 -10.86815 -10.24971 -9.89500 -8.27455 -5.93900 1.33863 1.37911 1.50412 1.96902 2.22744 2.70462 3.05736 3.12609 3.49884 3.82272 3.87941 3.96173 4.07060 4.21580 4.30094 4.54980 4.68057 4.77154 4.93412 4.98603 5.07609 5.11076 5.21461 5.29039 5.41578 5.50495 6.02084 6.45477 7.14133 7.48925 8.02778 8.64141 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.009405 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.294047 B = 2976.495694 C = 3166.287772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.457 5.457 3 C -0.345 4.345 4 H 0.075 0.925 5 C -0.005 4.005 6 N -0.896 5.896 7 Si 0.992 3.008 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.276 1.276 11 C 0.460 3.540 12 O -0.640 6.640 13 C -0.157 4.157 14 C -0.098 4.098 15 C 0.066 3.934 16 F -0.229 7.229 17 C -0.138 4.138 18 C -0.144 4.144 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.272 0.728 23 H 0.069 0.931 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -9.326 -1.298 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.174 5.174 3 C -0.473 4.473 4 H 0.093 0.907 5 C -0.205 4.205 6 N -0.535 5.535 7 Si 0.815 3.185 8 H -0.193 1.193 9 H -0.194 1.194 10 H -0.201 1.201 11 C 0.250 3.750 12 O -0.529 6.529 13 C -0.161 4.161 14 C -0.136 4.136 15 C 0.011 3.989 16 F -0.210 7.210 17 C -0.175 4.175 18 C -0.181 4.181 19 H 0.087 0.913 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.136 0.864 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.533 -9.134 -1.208 9.868 hybrid contribution 0.544 1.324 0.091 1.434 sum -2.989 -7.810 -1.117 8.437 Atomic orbital electron populations 1.21637 0.78688 0.98701 1.02269 1.43922 1.07200 1.04646 1.61597 1.19770 0.92620 0.84062 1.50843 0.90708 1.26057 0.96775 1.02208 0.95508 1.70256 1.07479 1.28210 1.47590 0.84953 0.77894 0.76887 0.78729 1.19333 1.19375 1.20121 1.19915 0.87081 0.84962 0.83084 1.90458 1.16308 1.87831 1.58332 1.21035 1.05604 0.94590 0.94841 1.21633 0.97120 1.03449 0.91398 1.21941 0.94740 1.02117 0.80133 1.92713 1.83757 1.94955 1.49556 1.23067 0.97207 0.96736 1.00481 1.23188 0.98582 1.02414 0.93910 0.91289 0.93132 0.93432 0.91760 0.91269 0.86392 0.88197 0.93785 0.90342 0.84644 0.84437 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.93 8.01 127.77 1.02 6.95 16 2 N -0.46 -24.12 3.03 -658.89 -1.99 -26.12 16 3 C -0.35 -20.08 9.56 84.04 0.80 -19.28 16 4 H 0.07 4.67 7.19 -2.91 -0.02 4.65 16 5 C 0.00 -0.24 5.41 84.93 0.46 0.22 16 6 N -0.90 -47.33 9.52 21.66 0.21 -47.12 16 7 Si 0.99 43.13 29.56 68.60 2.03 45.16 16 8 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 C 0.46 22.72 6.20 87.66 0.54 23.26 16 12 O -0.64 -36.88 16.52 -3.07 -0.05 -36.93 16 13 C -0.16 -5.44 0.70 -52.93 -0.04 -5.48 16 14 C -0.10 -2.89 5.16 30.59 0.16 -2.73 16 15 C 0.07 2.06 7.48 71.98 0.54 2.60 16 16 F -0.23 -7.42 17.36 44.97 0.78 -6.64 16 17 C -0.14 -3.84 9.83 30.62 0.30 -3.54 16 18 C -0.14 -3.93 8.87 30.62 0.27 -3.65 16 19 H 0.07 2.55 4.49 -2.39 -0.01 2.54 16 20 H 0.05 2.48 6.99 -2.39 -0.02 2.46 16 21 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 22 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 23 H 0.07 2.25 6.68 -2.39 -0.02 2.24 16 24 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 25 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.04 1.70 7.64 -2.39 -0.02 1.68 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.14 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -67.99 255.73 6.17 -61.82 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.13 Total: 11.48 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.06 Total: -1.65 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.79 Total: -73.24 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.05 Total: -36.93 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.78 Total: -6.64 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.99 6.17 -61.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379411853.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.635 kcal (2) G-P(sol) polarization free energy of solvation -67.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds