Wall clock time and date at job start Mon Mar 30 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47723 * 2 1 4 4 C 1.50698 * 109.47223 * 120.00670 * 2 1 3 5 5 H 1.08000 * 120.00711 * 114.48151 * 4 2 1 6 6 C 1.37882 * 119.99822 * 294.47755 * 4 2 1 7 7 N 1.31515 * 120.00180 * 164.52949 * 6 4 2 8 8 Si 1.86805 * 119.99952 * 344.81254 * 6 4 2 9 9 H 1.48498 * 109.47004 * 269.71977 * 8 6 4 10 10 H 1.48505 * 109.47080 * 29.72156 * 8 6 4 11 11 H 1.48501 * 109.47138 * 149.72150 * 8 6 4 12 12 N 1.46906 * 109.46995 * 240.00336 * 2 1 3 13 13 O 1.46301 * 110.99735 * 299.99803 * 12 2 1 14 14 C 1.42896 * 114.00000 * 179.97438 * 13 12 2 15 15 C 1.53184 * 109.54780 * 274.56150 * 14 13 12 16 16 C 1.53085 * 109.16560 * 183.15265 * 15 14 13 17 17 O 1.42903 * 109.41690 * 57.60825 * 16 15 14 18 18 C 1.42908 * 114.09588 * 298.84136 * 17 16 15 19 19 C 1.53087 * 109.41637 * 61.15603 * 18 17 16 20 20 H 1.09006 * 109.46875 * 293.75212 * 1 2 3 21 21 H 1.08997 * 109.47236 * 53.74521 * 1 2 3 22 22 H 1.08999 * 109.47327 * 173.75065 * 1 2 3 23 23 H 0.97002 * 119.99698 * 355.19471 * 7 6 4 24 24 H 1.00896 * 110.99921 * 63.95384 * 12 2 1 25 25 H 1.09004 * 109.54552 * 34.82557 * 14 13 12 26 26 H 1.08998 * 109.51528 * 303.05608 * 15 14 13 27 27 H 1.08994 * 109.52098 * 63.24096 * 15 14 13 28 28 H 1.08998 * 109.47976 * 297.62359 * 16 15 14 29 29 H 1.09000 * 109.48295 * 177.59157 * 16 15 14 30 30 H 1.09002 * 109.48150 * 301.17355 * 18 17 16 31 31 H 1.09000 * 109.49121 * 181.14878 * 18 17 16 32 32 H 1.09001 * 109.52474 * 182.48547 * 19 18 17 33 33 H 1.09008 * 109.51951 * 62.29730 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5778 -1.6377 1.1338 6 6 1.7957 -0.1769 2.4795 7 7 1.9534 -0.9204 3.5528 8 14 1.2434 1.5997 2.6469 9 1 2.4337 2.4780 2.7770 10 1 0.4676 1.9925 1.4430 11 1 0.3897 1.7411 3.8537 12 7 2.0196 -0.6925 -1.1995 13 8 1.5505 -2.0778 -1.2333 14 6 1.9904 -2.8126 -2.3772 15 6 1.0289 -2.5680 -3.5444 16 6 1.4630 -3.4197 -4.7401 17 8 1.4876 -4.7966 -4.3586 18 6 2.4041 -5.0933 -3.3030 19 6 2.0079 -4.3089 -2.0495 20 1 -0.3633 0.4140 0.9407 21 1 -0.3633 0.6077 -0.8287 22 1 -0.3634 -1.0215 -0.1119 23 1 2.1681 -1.8621 3.4632 24 1 1.7502 -0.1989 -2.0373 25 1 2.9933 -2.4886 -2.6553 26 1 0.0176 -2.8457 -3.2474 27 1 1.0520 -1.5139 -3.8204 28 1 2.4585 -3.1138 -5.0619 29 1 0.7577 -3.2821 -5.5596 30 1 3.4119 -4.8094 -3.6060 31 1 2.3769 -6.1614 -3.0871 32 1 2.7311 -4.4997 -1.2566 33 1 1.0162 -4.6217 -1.7224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382001912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:01 Heat of formation + Delta-G solvation = -77.878585 kcal Electronic energy + Delta-G solvation = -15041.729439 eV Core-core repulsion = 12489.176209 eV Total energy + Delta-G solvation = -2552.553230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38718 -38.09707 -36.24066 -34.05688 -32.60295 -32.14505 -28.98168 -26.79369 -25.15093 -24.58255 -21.90794 -21.30386 -19.73238 -18.17586 -17.19347 -17.02909 -16.56659 -15.83521 -15.60418 -15.39322 -14.86040 -14.63643 -14.29261 -13.96967 -13.85150 -13.40504 -13.11256 -12.80733 -12.44333 -12.33991 -12.21860 -11.97310 -11.46564 -11.39058 -11.08376 -10.92705 -10.68317 -10.47486 -9.43237 -8.73847 -6.32024 1.48453 1.55043 1.70392 1.95705 2.53371 2.89591 3.09591 3.72453 3.78561 3.93327 3.96184 4.15522 4.22346 4.39140 4.49775 4.54032 4.64406 4.64998 4.70415 4.79358 4.82441 4.98756 5.01011 5.08136 5.17327 5.48151 5.78093 5.95330 6.08708 6.17123 6.65813 6.69284 7.45010 8.65342 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056645 B = 0.007127 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.191176 B = 3927.633444 C = 4247.479224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.072 0.928 4 C -0.577 4.577 5 H 0.013 0.987 6 C -0.029 4.029 7 N -0.944 5.944 8 Si 1.088 2.912 9 H -0.270 1.270 10 H -0.232 1.232 11 H -0.289 1.289 12 N -0.495 5.495 13 O -0.261 6.261 14 C 0.074 3.926 15 C -0.173 4.173 16 C 0.067 3.933 17 O -0.399 6.399 18 C 0.073 3.927 19 C -0.148 4.148 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.032 0.968 23 H 0.248 0.752 24 H 0.327 0.673 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 -1.325 -17.172 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.089 0.911 4 C -0.616 4.616 5 H 0.031 0.969 6 C -0.225 4.225 7 N -0.581 5.581 8 Si 0.907 3.093 9 H -0.195 1.195 10 H -0.155 1.155 11 H -0.215 1.215 12 N -0.165 5.165 13 O -0.268 6.268 14 C 0.015 3.985 15 C -0.212 4.212 16 C -0.010 4.010 17 O -0.318 6.318 18 C -0.003 4.003 19 C -0.187 4.187 20 H 0.068 0.932 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.142 0.858 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.317 -0.571 -15.729 15.795 hybrid contribution -0.202 -1.289 -0.667 1.465 sum -1.519 -1.860 -16.396 16.571 Atomic orbital electron populations 1.22611 0.98882 1.00091 1.00969 1.19837 0.91304 0.94009 0.88113 0.91116 1.21991 1.37984 1.09051 0.92527 0.96885 1.27357 0.94241 1.09374 0.91572 1.70936 1.47713 1.07460 1.31944 0.83620 0.77776 0.70406 0.77455 1.19540 1.15536 1.21547 1.66816 1.53698 0.90552 1.05424 1.90964 1.75093 1.17302 1.43469 1.22208 0.97714 0.91818 0.86761 1.22734 0.99981 1.01894 0.96557 1.22671 1.02445 0.80227 0.95647 1.87891 1.63480 1.26607 1.53817 1.22622 0.92685 1.00545 0.84490 1.22240 1.02704 0.93645 1.00142 0.93167 0.92165 0.94921 0.94331 0.85762 0.91371 0.92163 0.89834 0.91475 0.86683 0.91401 0.86646 0.91255 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.13 8.61 71.98 0.62 -6.51 16 2 C 0.18 8.31 2.70 44.17 0.12 8.43 16 3 H 0.07 3.09 6.77 -2.39 -0.02 3.08 16 4 C -0.58 -34.15 8.68 25.60 0.22 -33.93 16 5 H 0.01 0.87 7.91 -2.91 -0.02 0.85 16 6 C -0.03 -1.73 5.33 84.66 0.45 -1.28 16 7 N -0.94 -61.24 13.70 21.45 0.29 -60.95 16 8 Si 1.09 49.15 26.17 68.60 1.80 50.94 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.23 -8.86 5.53 99.48 0.55 -8.31 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 N -0.49 -20.72 7.08 -171.79 -1.22 -21.93 16 13 O -0.26 -11.36 9.46 -50.16 -0.47 -11.83 16 14 C 0.07 2.40 2.93 30.72 0.09 2.49 16 15 C -0.17 -4.45 5.79 30.68 0.18 -4.27 16 16 C 0.07 1.35 6.84 72.01 0.49 1.85 16 17 O -0.40 -9.74 10.77 -148.98 -1.60 -11.34 16 18 C 0.07 1.65 6.84 72.01 0.49 2.14 16 19 C -0.15 -4.45 5.79 30.68 0.18 -4.27 16 20 H 0.05 2.18 5.06 -2.38 -0.01 2.16 16 21 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.03 1.49 7.46 -2.39 -0.02 1.48 16 23 H 0.25 16.57 8.73 -92.71 -0.81 15.76 16 24 H 0.33 10.96 8.70 -89.70 -0.78 10.18 16 25 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.90 7.85 -2.39 -0.02 1.88 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -71.96 266.13 1.75 -70.21 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.11 Total: 20.24 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 2.84 Total: -35.34 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -0.92 Total: -82.88 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -2.08 Total: -23.18 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.80 Total: 50.94 kcal Total: -71.96 1.75 -70.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382001912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.667 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds