Wall clock time and date at job start Mon Mar 30 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99977 * 2 1 4 4 H 1.08994 * 110.45468 * 332.60403 * 3 2 1 5 5 C 1.54472 * 110.62932 * 95.29073 * 3 2 1 6 6 O 1.44426 * 104.80950 * 94.72202 * 5 3 2 7 7 C 1.44430 * 105.27000 * 40.51253 * 6 5 3 8 8 C 1.54481 * 104.80191 * 319.48926 * 7 6 5 9 9 H 1.09002 * 110.62806 * 265.27450 * 8 7 6 10 10 N 1.46901 * 110.51082 * 142.62520 * 8 7 6 11 11 C 1.46902 * 110.99910 * 90.35805 * 10 8 7 12 12 H 1.09004 * 109.47152 * 324.99980 * 11 10 8 13 13 C 1.53000 * 109.47521 * 85.00200 * 11 10 8 14 14 C 1.50702 * 109.47126 * 205.00112 * 11 10 8 15 15 H 1.08005 * 120.00109 * 354.48347 * 14 11 10 16 16 C 1.37877 * 120.00454 * 174.47783 * 14 11 10 17 17 N 1.31513 * 120.00213 * 164.58415 * 16 14 11 18 18 Si 1.86809 * 119.99705 * 344.86382 * 16 14 11 19 19 H 1.48504 * 109.46794 * 269.72021 * 18 16 14 20 20 H 1.48494 * 109.46973 * 29.71877 * 18 16 14 21 21 H 1.48498 * 109.46903 * 149.72223 * 18 16 14 22 22 H 1.08995 * 109.47519 * 60.00305 * 1 2 3 23 23 H 1.09003 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47030 * 299.99923 * 1 2 3 25 25 H 1.09005 * 110.37373 * 213.55686 * 5 3 2 26 26 H 1.09004 * 110.37306 * 335.78040 * 5 3 2 27 27 H 1.09002 * 110.37039 * 200.66245 * 7 6 5 28 28 H 1.09000 * 110.37254 * 78.32050 * 7 6 5 29 29 H 1.00895 * 111.00276 * 214.31081 * 10 8 7 30 30 H 1.08994 * 109.46629 * 53.55019 * 13 11 10 31 31 H 1.08993 * 109.47350 * 173.55874 * 13 11 10 32 32 H 1.09003 * 109.46867 * 293.55719 * 13 11 10 33 33 H 0.97000 * 119.99769 * 355.18144 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3368 2.0222 -0.4699 5 6 2.3533 1.7484 1.4395 6 8 3.7415 1.3905 1.6149 7 6 4.3817 1.7260 0.3645 8 6 3.3753 1.2903 -0.7235 9 1 3.6069 0.2870 -1.0813 10 7 3.3773 2.2462 -1.8390 11 6 4.3566 1.8584 -2.8629 12 1 5.2260 1.4094 -2.3826 13 6 3.7220 0.8457 -3.8182 14 6 4.7845 3.0788 -3.6366 15 1 4.3062 4.0297 -3.4531 16 6 5.7867 2.9817 -4.5785 17 7 5.9578 3.9442 -5.4583 18 14 6.8965 1.4794 -4.6100 19 1 8.0803 1.7203 -3.7462 20 1 6.1477 0.3002 -4.1059 21 1 7.3438 1.2235 -6.0027 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.2227 2.8253 1.5465 26 1 1.7292 1.2180 2.1587 27 1 5.3171 1.1767 0.2578 28 1 4.5621 2.7994 0.3065 29 1 2.4550 2.3388 -2.2375 30 1 2.7900 1.2518 -4.2113 31 1 4.4069 0.6445 -4.6418 32 1 3.5169 -0.0807 -3.2817 33 1 5.3366 4.6885 -5.4898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382214277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:55 Heat of formation + Delta-G solvation = -84.732954 kcal Electronic energy + Delta-G solvation = -15172.038969 eV Core-core repulsion = 12619.188511 eV Total energy + Delta-G solvation = -2552.850457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.68969 -36.92945 -35.91937 -32.64611 -30.58242 -28.78026 -27.02310 -26.35352 -24.73546 -22.49693 -20.70843 -19.90248 -17.56628 -16.88559 -16.26324 -15.65096 -15.21607 -14.75149 -14.37769 -13.89133 -13.79141 -13.31757 -12.84362 -12.19184 -12.00607 -11.85659 -11.57906 -11.43519 -11.15859 -11.05056 -10.71535 -10.52225 -10.10201 -9.89421 -9.62529 -9.30715 -8.91115 -8.28880 -7.61159 -6.42192 -4.03327 3.40749 3.43030 3.57003 3.63696 4.14919 4.50385 4.62560 4.96344 4.98594 5.12897 5.23538 5.27366 5.31675 5.49782 5.56664 5.62045 5.77468 5.81020 6.14886 6.24430 6.24679 6.37780 6.59004 6.74786 6.89159 7.11481 7.21953 7.72632 8.14526 8.25189 8.45218 8.99953 9.64069 10.96339 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040337 B = 0.008242 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.981957 B = 3396.300673 C = 3601.891744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.050 3.950 4 H 0.081 0.919 5 C 0.033 3.967 6 O -0.376 6.376 7 C 0.056 3.944 8 C 0.053 3.947 9 H 0.066 0.934 10 N -0.662 5.662 11 C 0.188 3.812 12 H 0.029 0.971 13 C -0.175 4.175 14 C -0.583 4.583 15 H 0.063 0.937 16 C 0.029 3.971 17 N -0.909 5.909 18 Si 1.040 2.960 19 H -0.286 1.286 20 H -0.274 1.274 21 H -0.286 1.286 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.331 0.669 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -6.576 10.378 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C -0.009 4.009 4 H 0.099 0.901 5 C -0.045 4.045 6 O -0.295 6.295 7 C -0.021 4.021 8 C -0.058 4.058 9 H 0.084 0.916 10 N -0.294 5.294 11 C 0.079 3.921 12 H 0.047 0.953 13 C -0.234 4.234 14 C -0.621 4.621 15 H 0.081 0.919 16 C -0.175 4.175 17 N -0.544 5.544 18 Si 0.869 3.131 19 H -0.212 1.212 20 H -0.199 1.199 21 H -0.212 1.212 22 H 0.061 0.939 23 H 0.103 0.897 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.223 -7.048 10.119 14.291 hybrid contribution -2.166 0.220 0.066 2.178 sum -9.389 -6.828 10.185 15.444 Atomic orbital electron populations 1.22810 0.81380 1.02674 0.99912 1.87983 1.19370 1.27330 1.94857 1.23787 0.95787 0.84962 0.96319 0.90102 1.23759 0.84591 0.99705 0.96431 1.89095 1.20066 1.85273 1.35023 1.23520 0.95765 1.01458 0.81339 1.22968 0.92312 0.96684 0.93877 0.91597 1.60912 1.10963 1.46434 1.11043 1.19641 0.89922 0.94860 0.87695 0.95270 1.22842 1.01114 0.98276 1.01212 1.21955 1.23070 0.95136 1.21970 0.91879 1.25675 0.97487 1.02343 0.92022 1.70801 1.39386 1.11533 1.32671 0.84158 0.76314 0.76085 0.76578 1.21226 1.19931 1.21219 0.93920 0.89686 0.94168 0.91453 0.89226 0.89161 0.90439 0.85104 0.93801 0.92538 0.95943 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.40 16 2 O -0.38 -5.59 10.35 -35.23 -0.36 -5.95 16 3 C 0.05 0.74 3.28 -25.17 -0.08 0.66 16 4 H 0.08 1.09 7.22 -51.93 -0.38 0.72 16 5 C 0.03 0.46 7.38 37.93 0.28 0.74 16 6 O -0.38 -6.33 11.65 -35.23 -0.41 -6.74 16 7 C 0.06 0.98 7.35 37.93 0.28 1.25 16 8 C 0.05 0.93 3.01 -66.14 -0.20 0.73 16 9 H 0.07 1.26 7.12 -51.93 -0.37 0.89 16 10 N -0.66 -13.32 6.04 -99.31 -0.60 -13.92 16 11 C 0.19 4.38 1.99 -68.86 -0.14 4.25 16 12 H 0.03 0.70 6.49 -51.93 -0.34 0.36 16 13 C -0.18 -3.81 8.45 37.16 0.31 -3.49 16 14 C -0.58 -16.19 9.12 -34.44 -0.31 -16.51 16 15 H 0.06 1.91 8.06 -52.48 -0.42 1.49 16 16 C 0.03 0.84 5.33 -17.82 -0.09 0.74 16 17 N -0.91 -27.84 13.70 55.43 0.76 -27.08 16 18 Si 1.04 24.99 26.17 -169.99 -4.45 20.55 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.04 5.53 56.52 0.31 -5.73 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 1.38 8.06 -51.93 -0.42 0.97 16 29 H 0.33 6.29 7.73 -39.29 -0.30 5.99 16 30 H 0.04 0.91 8.01 -51.93 -0.42 0.50 16 31 H 0.06 1.27 5.06 -51.93 -0.26 1.01 16 32 H 0.02 0.43 7.59 -51.93 -0.39 0.04 16 33 H 0.27 8.18 8.73 -40.82 -0.36 7.82 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -30.67 267.24 -4.97 -35.64 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.07 Total: 3.72 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 1.14 Total: -10.23 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.16 Total: -41.00 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.78 Total: -12.70 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.45 Total: 20.55 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.67 -4.97 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382214277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.095 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds