Wall clock time and date at job start Mon Mar 30 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99977 * 2 1 4 4 H 1.08994 * 110.45468 * 332.60403 * 3 2 1 5 5 C 1.54472 * 110.62932 * 95.29073 * 3 2 1 6 6 O 1.44426 * 104.80950 * 94.72202 * 5 3 2 7 7 C 1.44430 * 105.27000 * 40.51253 * 6 5 3 8 8 C 1.54481 * 104.80191 * 319.48926 * 7 6 5 9 9 H 1.09002 * 110.62806 * 265.27450 * 8 7 6 10 10 N 1.46901 * 110.51082 * 142.62520 * 8 7 6 11 11 C 1.46902 * 110.99910 * 90.35805 * 10 8 7 12 12 H 1.09004 * 109.47152 * 324.99980 * 11 10 8 13 13 C 1.53000 * 109.47521 * 85.00200 * 11 10 8 14 14 C 1.50702 * 109.47126 * 205.00112 * 11 10 8 15 15 H 1.08005 * 120.00109 * 354.48347 * 14 11 10 16 16 C 1.37877 * 120.00454 * 174.47783 * 14 11 10 17 17 N 1.31513 * 120.00213 * 164.58415 * 16 14 11 18 18 Si 1.86809 * 119.99705 * 344.86382 * 16 14 11 19 19 H 1.48504 * 109.46794 * 269.72021 * 18 16 14 20 20 H 1.48494 * 109.46973 * 29.71877 * 18 16 14 21 21 H 1.48498 * 109.46903 * 149.72223 * 18 16 14 22 22 H 1.08995 * 109.47519 * 60.00305 * 1 2 3 23 23 H 1.09003 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47030 * 299.99923 * 1 2 3 25 25 H 1.09005 * 110.37373 * 213.55686 * 5 3 2 26 26 H 1.09004 * 110.37306 * 335.78040 * 5 3 2 27 27 H 1.09002 * 110.37039 * 200.66245 * 7 6 5 28 28 H 1.09000 * 110.37254 * 78.32050 * 7 6 5 29 29 H 1.00895 * 111.00276 * 214.31081 * 10 8 7 30 30 H 1.08994 * 109.46629 * 53.55019 * 13 11 10 31 31 H 1.08993 * 109.47350 * 173.55874 * 13 11 10 32 32 H 1.09003 * 109.46867 * 293.55719 * 13 11 10 33 33 H 0.97000 * 119.99769 * 355.18144 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3368 2.0222 -0.4699 5 6 2.3533 1.7484 1.4395 6 8 3.7415 1.3905 1.6149 7 6 4.3817 1.7260 0.3645 8 6 3.3753 1.2903 -0.7235 9 1 3.6069 0.2870 -1.0813 10 7 3.3773 2.2462 -1.8390 11 6 4.3566 1.8584 -2.8629 12 1 5.2260 1.4094 -2.3826 13 6 3.7220 0.8457 -3.8182 14 6 4.7845 3.0788 -3.6366 15 1 4.3062 4.0297 -3.4531 16 6 5.7867 2.9817 -4.5785 17 7 5.9578 3.9442 -5.4583 18 14 6.8965 1.4794 -4.6100 19 1 8.0803 1.7203 -3.7462 20 1 6.1477 0.3002 -4.1059 21 1 7.3438 1.2235 -6.0027 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.2227 2.8253 1.5465 26 1 1.7292 1.2180 2.1587 27 1 5.3171 1.1767 0.2578 28 1 4.5621 2.7994 0.3065 29 1 2.4550 2.3388 -2.2375 30 1 2.7900 1.2518 -4.2113 31 1 4.4069 0.6445 -4.6418 32 1 3.5169 -0.0807 -3.2817 33 1 5.3366 4.6885 -5.4898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382214277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:55 Heat of formation + Delta-G solvation = -109.356844 kcal Electronic energy + Delta-G solvation = -15173.106741 eV Core-core repulsion = 12619.188511 eV Total energy + Delta-G solvation = -2553.918229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.92823 -38.04566 -37.59899 -34.64922 -32.21642 -30.02336 -28.42255 -27.34950 -26.77772 -23.78312 -22.10491 -21.66621 -19.62242 -18.07358 -17.57942 -16.81455 -16.48164 -16.14866 -15.90575 -15.31378 -15.05286 -15.00079 -14.48925 -13.95530 -13.58857 -13.28159 -13.05916 -12.70921 -12.58329 -12.39769 -12.32838 -11.96337 -11.89194 -11.44005 -11.09637 -11.01856 -10.47346 -10.44560 -9.26198 -8.67633 -6.31052 1.48656 1.52791 1.69973 2.51050 2.56587 2.94000 3.09513 3.39156 3.57794 3.82377 3.98195 4.23534 4.38230 4.46447 4.49015 4.51854 4.57331 4.61045 4.71278 4.73576 4.82451 4.83202 4.87371 5.05526 5.38522 5.64407 5.82422 6.09784 6.15680 6.33813 6.60136 6.73329 7.45847 8.68285 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040337 B = 0.008242 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.981957 B = 3396.300673 C = 3601.891744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.399 6.399 3 C 0.057 3.943 4 H 0.093 0.907 5 C 0.030 3.970 6 O -0.389 6.389 7 C 0.058 3.942 8 C 0.052 3.948 9 H 0.056 0.944 10 N -0.668 5.668 11 C 0.190 3.810 12 H 0.030 0.970 13 C -0.170 4.170 14 C -0.582 4.582 15 H 0.024 0.976 16 C -0.022 4.022 17 N -0.943 5.943 18 Si 1.080 2.920 19 H -0.275 1.275 20 H -0.241 1.241 21 H -0.287 1.287 22 H 0.047 0.953 23 H 0.100 0.900 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.337 0.663 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 -8.395 11.641 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.318 6.318 3 C -0.001 4.001 4 H 0.111 0.889 5 C -0.047 4.047 6 O -0.307 6.307 7 C -0.019 4.019 8 C -0.059 4.059 9 H 0.074 0.926 10 N -0.300 5.300 11 C 0.081 3.919 12 H 0.048 0.952 13 C -0.229 4.229 14 C -0.621 4.621 15 H 0.042 0.958 16 C -0.219 4.219 17 N -0.580 5.580 18 Si 0.902 3.098 19 H -0.201 1.201 20 H -0.165 1.165 21 H -0.213 1.213 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.146 -8.867 11.411 16.589 hybrid contribution -2.012 0.846 -0.259 2.198 sum -10.158 -8.021 11.153 17.086 Atomic orbital electron populations 1.23059 0.79157 1.04144 1.01102 1.87944 1.21789 1.27094 1.95003 1.23647 0.94488 0.85603 0.96394 0.88880 1.23972 0.83331 1.00934 0.96421 1.89080 1.21635 1.85437 1.34594 1.23423 0.96001 1.00807 0.81705 1.22945 0.94651 0.95251 0.93077 0.92601 1.60704 1.10733 1.47651 1.10871 1.19437 0.91019 0.93099 0.88381 0.95229 1.22704 1.00824 0.98752 1.00594 1.22153 1.22421 0.95392 1.22105 0.95810 1.27064 0.99053 1.04280 0.91533 1.70931 1.39946 1.12348 1.34777 0.83674 0.75295 0.73999 0.76867 1.20127 1.16452 1.21341 0.93411 0.88180 0.92290 0.90036 0.87158 0.88999 0.91479 0.84459 0.93547 0.93357 0.93488 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.85 113.37 1.23 1.61 16 2 O -0.40 -10.69 10.35 -148.98 -1.54 -12.23 16 3 C 0.06 1.55 3.28 31.61 0.10 1.65 16 4 H 0.09 2.26 7.22 -2.39 -0.02 2.24 16 5 C 0.03 0.76 7.38 72.48 0.53 1.29 16 6 O -0.39 -12.31 11.65 -148.98 -1.74 -14.05 16 7 C 0.06 1.93 7.35 72.49 0.53 2.46 16 8 C 0.05 1.73 3.01 45.93 0.14 1.87 16 9 H 0.06 2.01 7.12 -2.39 -0.02 1.99 16 10 N -0.67 -26.10 6.04 -468.10 -2.83 -28.92 16 11 C 0.19 8.65 1.99 44.17 0.09 8.74 16 12 H 0.03 1.36 6.49 -2.39 -0.02 1.35 16 13 C -0.17 -6.99 8.45 71.98 0.61 -6.38 16 14 C -0.58 -32.70 9.12 25.60 0.23 -32.47 16 15 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 16 C -0.02 -1.25 5.33 84.65 0.45 -0.80 16 17 N -0.94 -59.17 13.70 21.45 0.29 -58.88 16 18 Si 1.08 49.56 26.17 68.60 1.80 51.35 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.24 -9.70 5.53 99.48 0.55 -9.15 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H 0.05 0.80 8.11 -2.39 -0.02 0.78 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.11 2.30 8.09 -2.39 -0.02 2.28 16 27 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 28 H 0.07 2.35 8.06 -2.39 -0.02 2.33 16 29 H 0.34 12.36 7.73 -89.70 -0.69 11.66 16 30 H 0.05 1.85 8.01 -2.39 -0.02 1.83 16 31 H 0.05 2.05 5.06 -2.39 -0.01 2.04 16 32 H 0.05 1.70 7.59 -2.39 -0.02 1.68 16 33 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 Total: -1.00 -66.02 267.24 0.11 -65.91 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.20 Total: 18.84 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.92 Total: -22.02 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -2.53 Total: -87.80 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -3.28 Total: -26.28 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.80 Total: 51.35 kcal Total: -66.02 0.11 -65.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382214277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.448 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds