Wall clock time and date at job start Mon Mar 30 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99899 * 2 1 4 4 H 1.09007 * 110.45585 * 328.84781 * 3 2 1 5 5 C 1.54482 * 110.51295 * 91.45303 * 3 2 1 6 6 O 1.44419 * 104.80226 * 94.80576 * 5 3 2 7 7 C 1.44422 * 105.27798 * 40.51363 * 6 5 3 8 8 C 1.54486 * 104.80231 * 319.48828 * 7 6 5 9 9 H 1.08998 * 110.51030 * 265.33694 * 8 7 6 10 10 N 1.46897 * 110.50989 * 142.62410 * 8 7 6 11 11 C 1.46898 * 110.99843 * 86.45785 * 10 8 7 12 12 H 1.08997 * 109.47580 * 34.99490 * 11 10 8 13 13 C 1.52999 * 109.46702 * 274.99404 * 11 10 8 14 14 C 1.50704 * 109.46944 * 154.99835 * 11 10 8 15 15 H 1.08002 * 120.00178 * 5.45676 * 14 11 10 16 16 C 1.37880 * 119.99738 * 185.45406 * 14 11 10 17 17 N 1.31512 * 120.00059 * 9.56590 * 16 14 11 18 18 Si 1.86800 * 119.99980 * 189.56360 * 16 14 11 19 19 H 1.48496 * 109.47152 * 84.99209 * 18 16 14 20 20 H 1.48496 * 109.47413 * 204.99874 * 18 16 14 21 21 H 1.48509 * 109.46903 * 324.99829 * 18 16 14 22 22 H 1.08998 * 109.47088 * 299.99859 * 1 2 3 23 23 H 1.08994 * 109.47000 * 59.99959 * 1 2 3 24 24 H 1.09002 * 109.46507 * 180.02562 * 1 2 3 25 25 H 1.08998 * 110.36867 * 335.96904 * 5 3 2 26 26 H 1.09004 * 110.46426 * 213.68612 * 5 3 2 27 27 H 1.08992 * 110.37683 * 78.31671 * 7 6 5 28 28 H 1.08996 * 110.37242 * 200.66019 * 7 6 5 29 29 H 1.00892 * 111.00169 * 322.50011 * 10 8 7 30 30 H 1.09007 * 109.47121 * 64.63083 * 13 11 10 31 31 H 1.09007 * 109.47063 * 184.62822 * 13 11 10 32 32 H 1.09000 * 109.47339 * 304.62347 * 13 11 10 33 33 H 0.96996 * 119.99686 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3667 2.0090 -0.5283 5 6 2.2639 1.7851 1.4464 6 8 3.6388 1.4344 1.7156 7 6 4.3546 1.7397 0.4990 8 6 3.4173 1.2749 -0.6377 9 1 3.6718 0.2631 -0.9529 10 7 3.4875 2.2027 -1.7745 11 6 4.5884 1.8447 -2.6788 12 1 4.6953 0.7604 -2.7098 13 6 5.8889 2.4711 -2.1718 14 6 4.2890 2.3597 -4.0631 15 1 3.4172 2.9739 -4.2339 16 6 5.1281 2.0469 -5.1114 17 7 6.0782 1.1522 -4.9488 18 14 4.9155 2.8938 -6.7628 19 1 5.6434 4.1880 -6.7527 20 1 5.4617 2.0270 -7.8377 21 1 3.4720 3.1397 -7.0107 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.5983 1.2701 2.1391 26 1 2.1260 2.8638 1.5199 27 1 4.5378 2.8116 0.4252 28 1 5.2951 1.1898 0.4639 29 1 3.5753 3.1566 -1.4578 30 1 6.1488 2.0374 -1.2061 31 1 6.6892 2.2747 -2.8854 32 1 5.7555 3.5474 -2.0628 33 1 6.6683 0.9318 -5.6865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382214281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:57 Heat of formation + Delta-G solvation = -86.987037 kcal Electronic energy + Delta-G solvation = -15106.111444 eV Core-core repulsion = 12553.163243 eV Total energy + Delta-G solvation = -2552.948202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.62416 -36.80025 -35.68040 -32.59750 -30.18010 -28.48246 -26.86561 -26.21362 -25.00345 -22.36979 -20.56797 -20.38657 -16.98388 -16.59992 -15.90682 -15.55678 -14.99523 -14.70741 -14.41130 -13.95890 -13.36840 -13.11790 -12.54159 -12.23100 -11.79915 -11.56786 -11.52787 -11.30581 -10.95206 -10.87782 -10.61489 -10.46071 -10.26872 -9.93028 -9.80204 -9.30527 -8.98841 -8.35230 -7.42020 -6.02936 -4.02825 3.31917 3.38291 3.41451 3.85314 4.16149 4.44065 4.85362 5.02653 5.27152 5.29663 5.36870 5.43841 5.46309 5.54896 5.58255 5.74860 5.82646 5.86391 6.08712 6.29217 6.57511 6.70865 6.88296 6.95851 7.24814 7.43752 7.55169 7.84410 8.15131 8.42321 8.53461 9.02661 9.60672 11.06393 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.039717 B = 0.007722 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.815984 B = 3625.177829 C = 4048.484529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.061 3.939 4 H 0.086 0.914 5 C 0.023 3.977 6 O -0.376 6.376 7 C 0.020 3.980 8 C 0.063 3.937 9 H 0.100 0.900 10 N -0.669 5.669 11 C 0.210 3.790 12 H 0.044 0.956 13 C -0.166 4.166 14 C -0.500 4.500 15 H 0.062 0.938 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.327 0.673 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 1.370 9.767 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.002 3.998 4 H 0.104 0.896 5 C -0.055 4.055 6 O -0.294 6.294 7 C -0.059 4.059 8 C -0.049 4.049 9 H 0.118 0.882 10 N -0.300 5.300 11 C 0.103 3.897 12 H 0.062 0.938 13 C -0.226 4.226 14 C -0.539 4.539 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.328 0.675 9.477 11.998 hybrid contribution 0.518 1.046 -0.587 1.306 sum -6.810 1.721 8.890 11.330 Atomic orbital electron populations 1.22771 0.81585 1.02460 0.99765 1.87952 1.19207 1.27310 1.94749 1.23582 0.96388 0.85268 0.94565 0.89579 1.23927 0.84999 0.99340 0.97191 1.89096 1.19029 1.86180 1.35083 1.24451 0.97016 1.00005 0.84430 1.22962 0.91134 0.99950 0.90890 0.88212 1.60772 1.50407 1.04113 1.14681 1.19287 0.83436 0.96739 0.90270 0.93827 1.22498 1.03242 0.98450 0.98362 1.21066 1.09529 1.31504 0.91778 0.91965 1.24942 0.95664 0.94921 0.98752 1.69962 1.19875 1.30939 1.32470 0.86572 0.78345 0.79439 0.83403 1.20721 1.21420 1.19949 0.94581 0.93719 0.89885 0.89204 0.91893 0.92239 0.88850 0.85555 0.96704 0.90889 0.95134 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.87 101.05 1.10 1.47 16 2 O -0.37 -6.16 10.35 -35.23 -0.36 -6.53 16 3 C 0.06 0.97 3.36 -25.16 -0.08 0.88 16 4 H 0.09 1.32 7.68 -51.92 -0.40 0.92 16 5 C 0.02 0.32 7.38 37.94 0.28 0.60 16 6 O -0.38 -6.35 11.65 -35.23 -0.41 -6.76 16 7 C 0.02 0.33 5.77 37.94 0.22 0.55 16 8 C 0.06 1.15 3.22 -66.14 -0.21 0.94 16 9 H 0.10 2.07 7.38 -51.93 -0.38 1.69 16 10 N -0.67 -13.74 6.00 -99.31 -0.60 -14.34 16 11 C 0.21 5.14 2.44 -68.86 -0.17 4.97 16 12 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 13 C -0.17 -3.77 8.77 37.16 0.33 -3.45 16 14 C -0.50 -13.64 8.76 -34.44 -0.30 -13.95 16 15 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 16 C 0.06 1.62 5.16 -17.82 -0.09 1.52 16 17 N -0.89 -25.60 12.17 55.43 0.67 -24.92 16 18 Si 0.89 21.32 29.55 -169.99 -5.02 16.29 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.04 0.53 8.10 -51.93 -0.42 0.10 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.94 7.61 -51.93 -0.40 0.54 16 28 H 0.09 1.57 7.39 -51.93 -0.38 1.19 16 29 H 0.33 6.17 7.85 -39.30 -0.31 5.86 16 30 H 0.01 0.29 6.11 -51.93 -0.32 -0.03 16 31 H 0.07 1.86 6.81 -51.93 -0.35 1.50 16 32 H 0.03 0.64 8.05 -51.93 -0.42 0.23 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 269.84 15.07 4.07 4.07 Total: -1.00 -29.45 269.84 -5.59 -35.04 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.00 Total: 3.60 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 1.06 Total: -6.45 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.08 Total: -39.26 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.78 Total: -13.28 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.45 -5.59 -35.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382214281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.951 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds