Wall clock time and date at job start Mon Mar 30 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99899 * 2 1 4 4 H 1.09007 * 110.45585 * 328.84781 * 3 2 1 5 5 C 1.54482 * 110.51295 * 91.45303 * 3 2 1 6 6 O 1.44419 * 104.80226 * 94.80576 * 5 3 2 7 7 C 1.44422 * 105.27798 * 40.51363 * 6 5 3 8 8 C 1.54486 * 104.80231 * 319.48828 * 7 6 5 9 9 H 1.08998 * 110.51030 * 265.33694 * 8 7 6 10 10 N 1.46897 * 110.50989 * 142.62410 * 8 7 6 11 11 C 1.46898 * 110.99843 * 86.45785 * 10 8 7 12 12 H 1.08997 * 109.47580 * 34.99490 * 11 10 8 13 13 C 1.52999 * 109.46702 * 274.99404 * 11 10 8 14 14 C 1.50704 * 109.46944 * 154.99835 * 11 10 8 15 15 H 1.08002 * 120.00178 * 5.45676 * 14 11 10 16 16 C 1.37880 * 119.99738 * 185.45406 * 14 11 10 17 17 N 1.31512 * 120.00059 * 9.56590 * 16 14 11 18 18 Si 1.86800 * 119.99980 * 189.56360 * 16 14 11 19 19 H 1.48496 * 109.47152 * 84.99209 * 18 16 14 20 20 H 1.48496 * 109.47413 * 204.99874 * 18 16 14 21 21 H 1.48509 * 109.46903 * 324.99829 * 18 16 14 22 22 H 1.08998 * 109.47088 * 299.99859 * 1 2 3 23 23 H 1.08994 * 109.47000 * 59.99959 * 1 2 3 24 24 H 1.09002 * 109.46507 * 180.02562 * 1 2 3 25 25 H 1.08998 * 110.36867 * 335.96904 * 5 3 2 26 26 H 1.09004 * 110.46426 * 213.68612 * 5 3 2 27 27 H 1.08992 * 110.37683 * 78.31671 * 7 6 5 28 28 H 1.08996 * 110.37242 * 200.66019 * 7 6 5 29 29 H 1.00892 * 111.00169 * 322.50011 * 10 8 7 30 30 H 1.09007 * 109.47121 * 64.63083 * 13 11 10 31 31 H 1.09007 * 109.47063 * 184.62822 * 13 11 10 32 32 H 1.09000 * 109.47339 * 304.62347 * 13 11 10 33 33 H 0.96996 * 119.99686 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3667 2.0090 -0.5283 5 6 2.2639 1.7851 1.4464 6 8 3.6388 1.4344 1.7156 7 6 4.3546 1.7397 0.4990 8 6 3.4173 1.2749 -0.6377 9 1 3.6718 0.2631 -0.9529 10 7 3.4875 2.2027 -1.7745 11 6 4.5884 1.8447 -2.6788 12 1 4.6953 0.7604 -2.7098 13 6 5.8889 2.4711 -2.1718 14 6 4.2890 2.3597 -4.0631 15 1 3.4172 2.9739 -4.2339 16 6 5.1281 2.0469 -5.1114 17 7 6.0782 1.1522 -4.9488 18 14 4.9155 2.8938 -6.7628 19 1 5.6434 4.1880 -6.7527 20 1 5.4617 2.0270 -7.8377 21 1 3.4720 3.1397 -7.0107 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.5983 1.2701 2.1391 26 1 2.1260 2.8638 1.5199 27 1 4.5378 2.8116 0.4252 28 1 5.2951 1.1898 0.4639 29 1 3.5753 3.1566 -1.4578 30 1 6.1488 2.0374 -1.2061 31 1 6.6892 2.2747 -2.8854 32 1 5.7555 3.5474 -2.0628 33 1 6.6683 0.9318 -5.6865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382214281.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:57 Heat of formation + Delta-G solvation = -109.458972 kcal Electronic energy + Delta-G solvation = -15107.085901 eV Core-core repulsion = 12553.163243 eV Total energy + Delta-G solvation = -2553.922658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93040 -38.04239 -37.37105 -34.52936 -31.79873 -29.83078 -28.36041 -27.37121 -27.01026 -23.63596 -22.37354 -21.88344 -18.61732 -18.00317 -17.47047 -16.87488 -16.59964 -16.18934 -15.70783 -15.28637 -14.92446 -14.67012 -14.36148 -13.73414 -13.30666 -13.14232 -12.89430 -12.73024 -12.67995 -12.48945 -12.34701 -12.19084 -11.85000 -11.76928 -11.10648 -11.01599 -10.46369 -10.41447 -9.08265 -8.12704 -6.20069 1.43974 1.44207 1.54297 2.42808 2.69306 2.92690 3.17807 3.58124 3.74116 3.91645 4.07017 4.13211 4.38693 4.49404 4.55957 4.63697 4.70631 4.71224 4.74322 4.85466 4.86722 4.92978 5.03768 5.36613 5.61943 5.68189 5.74028 6.18910 6.30351 6.59260 6.77874 6.92780 7.48057 8.95686 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.039717 B = 0.007722 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.815984 B = 3625.177829 C = 4048.484529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.065 3.935 4 H 0.093 0.907 5 C 0.026 3.974 6 O -0.390 6.390 7 C 0.028 3.972 8 C 0.058 3.942 9 H 0.066 0.934 10 N -0.669 5.669 11 C 0.216 3.784 12 H 0.002 0.998 13 C -0.153 4.153 14 C -0.517 4.517 15 H 0.058 0.942 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.958 3.042 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.270 1.270 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.339 0.661 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 2.671 10.518 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.006 3.994 4 H 0.111 0.889 5 C -0.051 4.051 6 O -0.309 6.309 7 C -0.050 4.050 8 C -0.053 4.053 9 H 0.084 0.916 10 N -0.300 5.300 11 C 0.108 3.892 12 H 0.020 0.980 13 C -0.213 4.213 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.195 1.195 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.158 0.842 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.450 1.986 10.249 13.431 hybrid contribution 0.787 0.581 -0.776 1.249 sum -7.662 2.568 9.473 12.452 Atomic orbital electron populations 1.23004 0.79321 1.03869 1.00966 1.87911 1.21750 1.27718 1.94997 1.23507 0.94729 0.85475 0.95666 0.88873 1.24103 0.83800 1.01138 0.96027 1.89082 1.20456 1.86576 1.34742 1.24285 0.96297 1.00647 0.83818 1.22919 0.93905 0.97679 0.90843 0.91582 1.60610 1.48752 1.05183 1.15498 1.19003 0.85476 0.94172 0.90578 0.97996 1.22303 1.01134 0.99356 0.98469 1.21405 1.09398 1.31403 0.93386 0.92405 1.25724 0.95440 0.95387 1.02314 1.70087 1.20697 1.32093 1.33482 0.85567 0.78422 0.78518 0.79090 1.19770 1.21340 1.19457 0.92050 0.93762 0.88524 0.87409 0.89205 0.90687 0.89513 0.84193 0.94541 0.93921 0.93594 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.87 113.37 1.23 1.77 16 2 O -0.40 -12.92 10.35 -148.98 -1.54 -14.46 16 3 C 0.06 1.97 3.36 31.61 0.11 2.07 16 4 H 0.09 2.65 7.68 -2.38 -0.02 2.64 16 5 C 0.03 0.66 7.38 72.49 0.53 1.19 16 6 O -0.39 -12.37 11.65 -148.98 -1.74 -14.11 16 7 C 0.03 0.91 5.77 72.49 0.42 1.32 16 8 C 0.06 2.13 3.22 45.93 0.15 2.28 16 9 H 0.07 2.86 7.38 -2.39 -0.02 2.84 16 10 N -0.67 -27.23 6.00 -468.12 -2.81 -30.04 16 11 C 0.22 10.75 2.44 44.17 0.11 10.85 16 12 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 13 C -0.15 -6.95 8.77 71.98 0.63 -6.31 16 14 C -0.52 -28.43 8.76 25.60 0.22 -28.20 16 15 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 16 C 0.01 0.55 5.16 84.66 0.44 0.98 16 17 N -0.92 -53.91 12.17 21.45 0.26 -53.65 16 18 Si 0.96 43.72 29.55 68.60 2.03 45.75 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.11 2.35 8.09 -2.39 -0.02 2.33 16 26 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.08 2.19 7.61 -2.39 -0.02 2.17 16 28 H 0.09 2.87 7.39 -2.39 -0.02 2.86 16 29 H 0.34 12.28 7.85 -89.70 -0.70 11.57 16 30 H 0.04 1.45 6.11 -2.38 -0.01 1.43 16 31 H 0.04 2.18 6.81 -2.38 -0.02 2.17 16 32 H 0.05 1.90 8.05 -2.39 -0.02 1.88 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -63.38 269.84 0.43 -62.96 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.39 Total: 17.60 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 3.84 Total: -14.04 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.55 Total: -83.69 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -3.28 Total: -28.57 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.38 0.43 -62.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382214281.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.504 kcal (2) G-P(sol) polarization free energy of solvation -63.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds