Wall clock time and date at job start Mon Mar 30 2020 02:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 S 1.81394 * 109.47140 * 2 1 4 4 C 1.81406 * 103.00232 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.90020 * 57.40979 * 4 3 2 6 6 C 1.55139 * 110.99041 * 293.54966 * 4 3 2 7 7 C 1.54316 * 103.01810 * 206.25214 * 6 4 3 8 8 N 1.47446 * 107.23320 * 22.28197 * 7 6 4 9 9 C 1.46900 * 111.00255 * 123.25926 * 8 7 6 10 10 C 1.50702 * 109.46996 * 69.87362 * 9 8 7 11 11 H 1.08003 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99871 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99899 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99902 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47093 * 90.00605 * 14 12 10 16 16 H 1.48503 * 109.47470 * 210.00553 * 14 12 10 17 17 H 1.48499 * 109.47317 * 330.00794 * 14 12 10 18 18 C 1.47843 * 108.56761 * 0.99070 * 8 7 6 19 19 H 1.09007 * 109.47385 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47359 * 300.00085 * 1 2 3 21 21 H 1.08996 * 109.47615 * 60.00012 * 1 2 3 22 22 H 1.09005 * 109.47359 * 239.99915 * 2 1 3 23 23 H 1.09004 * 109.47431 * 120.00234 * 2 1 3 24 24 H 1.08999 * 110.70823 * 87.86907 * 6 4 3 25 25 H 1.08996 * 110.85104 * 324.70348 * 6 4 3 26 26 H 1.08997 * 109.89177 * 262.87868 * 7 6 4 27 27 H 1.08995 * 110.02481 * 141.76401 * 7 6 4 28 28 H 1.08991 * 109.47253 * 189.87372 * 9 8 7 29 29 H 1.08999 * 109.46647 * 309.87636 * 9 8 7 30 30 H 0.96999 * 119.99890 * 179.97438 * 13 12 10 31 31 H 1.08998 * 110.37465 * 94.73106 * 18 8 7 32 32 H 1.09003 * 110.37404 * 217.07863 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2620 0.9169 -0.8570 6 6 4.4235 0.8684 1.3289 7 6 5.8739 1.3812 1.4499 8 7 5.9748 2.6035 0.6315 9 6 6.4355 3.7411 1.4387 10 6 7.8813 3.5388 1.8127 11 1 8.4053 2.6535 1.4840 12 6 8.5347 4.4835 2.5755 13 7 9.7966 4.3072 2.9014 14 14 7.6280 6.0143 3.1447 15 1 6.9925 5.7524 4.4610 16 1 8.5887 7.1393 3.2739 17 1 6.5821 6.3681 2.1517 18 6 4.6514 2.8800 0.0331 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.4035 -0.2195 1.2643 25 1 3.8211 1.2144 2.1688 26 1 6.5664 0.6268 1.0764 27 1 6.1028 1.6116 2.4903 28 1 6.3346 4.6604 0.8620 29 1 5.8325 3.8120 2.3440 30 1 10.2564 4.9720 3.4377 31 1 4.0942 3.5828 0.6525 32 1 4.7662 3.2718 -0.9775 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382862551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:29 Heat of formation + Delta-G solvation = -3.620390 kcal Electronic energy + Delta-G solvation = -12478.460389 eV Core-core repulsion = 10371.880107 eV Total energy + Delta-G solvation = -2106.580282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.28366 -33.11074 -32.91733 -31.21108 -28.56052 -26.95894 -23.79373 -22.19553 -20.96871 -19.85111 -16.68859 -16.44759 -15.82321 -15.20443 -14.87856 -14.24346 -13.64510 -13.15775 -12.85947 -12.79091 -12.48279 -12.23975 -11.78686 -11.70364 -11.49901 -11.30709 -10.83342 -10.66023 -10.54554 -10.10024 -9.80532 -9.78110 -9.29504 -8.58647 -7.66434 -7.44932 -6.05650 -4.03216 1.65640 2.58271 3.28363 3.36235 3.38908 4.41915 4.64373 4.75215 4.81275 4.90208 4.97472 5.19949 5.24314 5.33680 5.51893 5.58670 5.62523 5.73372 5.86195 5.93127 6.10206 6.20471 6.47718 6.57827 6.75966 6.90122 7.56925 7.85650 7.92446 8.63869 9.03587 9.56022 11.07566 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062186 B = 0.006358 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.154871 B = 4402.763220 C = 4617.659993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.261 6.261 4 C -0.062 4.062 5 H 0.097 0.903 6 C -0.136 4.136 7 C 0.056 3.944 8 N -0.514 5.514 9 C 0.157 3.843 10 C -0.509 4.509 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.874 3.126 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.065 3.935 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.029 0.971 29 H -0.013 1.013 30 H 0.264 0.736 31 H 0.047 0.953 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 -7.623 -4.487 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 S -0.033 6.033 4 C -0.191 4.191 5 H 0.115 0.885 6 C -0.177 4.177 7 C -0.074 4.074 8 N -0.239 5.239 9 C 0.030 3.970 10 C -0.547 4.547 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.701 3.299 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.065 4.065 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.005 0.995 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.234 -6.662 -4.797 18.192 hybrid contribution -0.177 -0.131 1.009 1.033 sum -16.411 -6.794 -3.789 18.161 Atomic orbital electron populations 1.21506 0.92502 1.02266 1.03104 1.23257 0.99831 0.95904 1.04801 1.86789 1.06142 1.12427 1.97966 1.24383 0.91440 1.01923 1.01388 0.88500 1.23201 0.98525 1.00149 0.95795 1.22677 0.93307 0.93098 0.98282 1.63656 1.21587 1.04774 1.33869 1.20400 0.96762 0.89240 0.90576 1.21012 0.93705 1.08170 1.31856 0.90160 1.24895 0.94766 0.97894 0.95720 1.69893 1.09889 1.35750 1.38368 0.86874 0.79985 0.83485 0.79512 1.20300 1.21064 1.19155 1.22835 0.89693 0.93026 1.00900 0.91340 0.91764 0.91789 0.90317 0.90172 0.91310 0.90672 0.91197 0.91469 0.95332 0.99511 0.92641 0.93428 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.92 37.15 0.37 -0.76 16 2 C -0.09 -0.90 6.55 37.15 0.24 -0.66 16 3 S -0.26 -3.51 21.20 -107.50 -2.28 -5.79 16 4 C -0.06 -0.92 3.56 -24.60 -0.09 -1.00 16 5 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 6 C -0.14 -2.03 6.31 -24.91 -0.16 -2.19 16 7 C 0.06 1.05 6.39 -2.84 -0.02 1.03 16 8 N -0.51 -10.96 5.15 -232.70 -1.20 -12.15 16 9 C 0.16 3.87 3.37 -4.97 -0.02 3.86 16 10 C -0.51 -14.62 9.22 -34.44 -0.32 -14.93 16 11 H 0.08 2.51 8.03 -52.48 -0.42 2.09 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 14 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 18 C 0.06 1.15 6.16 -2.30 -0.01 1.13 16 19 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 23 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.38 7.31 -51.93 -0.38 1.01 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H -0.01 -0.31 7.39 -51.93 -0.38 -0.70 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.05 0.88 7.70 -51.93 -0.40 0.48 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 272.65 15.07 4.11 4.11 Total: -1.00 -30.29 272.65 -8.70 -38.99 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -5.34 Total: -3.63 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.10 Total: -11.60 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.42 Total: -39.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.28 Total: -5.79 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.29 -8.70 -38.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382862551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.370 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds