Wall clock time and date at job start Mon Mar 30 2020 02:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 S 1.81394 * 109.47140 * 2 1 4 4 C 1.81406 * 103.00232 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.90020 * 57.40979 * 4 3 2 6 6 C 1.55139 * 110.99041 * 293.54966 * 4 3 2 7 7 C 1.54316 * 103.01810 * 206.25214 * 6 4 3 8 8 N 1.47446 * 107.23320 * 22.28197 * 7 6 4 9 9 C 1.46900 * 111.00255 * 123.25926 * 8 7 6 10 10 C 1.50702 * 109.46996 * 69.87362 * 9 8 7 11 11 H 1.08003 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99871 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99899 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99902 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47093 * 90.00605 * 14 12 10 16 16 H 1.48503 * 109.47470 * 210.00553 * 14 12 10 17 17 H 1.48499 * 109.47317 * 330.00794 * 14 12 10 18 18 C 1.47843 * 108.56761 * 0.99070 * 8 7 6 19 19 H 1.09007 * 109.47385 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47359 * 300.00085 * 1 2 3 21 21 H 1.08996 * 109.47615 * 60.00012 * 1 2 3 22 22 H 1.09005 * 109.47359 * 239.99915 * 2 1 3 23 23 H 1.09004 * 109.47431 * 120.00234 * 2 1 3 24 24 H 1.08999 * 110.70823 * 87.86907 * 6 4 3 25 25 H 1.08996 * 110.85104 * 324.70348 * 6 4 3 26 26 H 1.08997 * 109.89177 * 262.87868 * 7 6 4 27 27 H 1.08995 * 110.02481 * 141.76401 * 7 6 4 28 28 H 1.08991 * 109.47253 * 189.87372 * 9 8 7 29 29 H 1.08999 * 109.46647 * 309.87636 * 9 8 7 30 30 H 0.96999 * 119.99890 * 179.97438 * 13 12 10 31 31 H 1.08998 * 110.37465 * 94.73106 * 18 8 7 32 32 H 1.09003 * 110.37404 * 217.07863 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2620 0.9169 -0.8570 6 6 4.4235 0.8684 1.3289 7 6 5.8739 1.3812 1.4499 8 7 5.9748 2.6035 0.6315 9 6 6.4355 3.7411 1.4387 10 6 7.8813 3.5388 1.8127 11 1 8.4053 2.6535 1.4840 12 6 8.5347 4.4835 2.5755 13 7 9.7966 4.3072 2.9014 14 14 7.6280 6.0143 3.1447 15 1 6.9925 5.7524 4.4610 16 1 8.5887 7.1393 3.2739 17 1 6.5821 6.3681 2.1517 18 6 4.6514 2.8800 0.0331 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.4035 -0.2195 1.2643 25 1 3.8211 1.2144 2.1688 26 1 6.5664 0.6268 1.0764 27 1 6.1028 1.6116 2.4903 28 1 6.3346 4.6604 0.8620 29 1 5.8325 3.8120 2.3440 30 1 10.2564 4.9720 3.4377 31 1 4.0942 3.5828 0.6525 32 1 4.7662 3.2718 -0.9775 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382862551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:29 Heat of formation + Delta-G solvation = -23.478207 kcal Electronic energy + Delta-G solvation = -12479.321489 eV Core-core repulsion = 10371.880107 eV Total energy + Delta-G solvation = -2107.441381 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79765 -35.13263 -33.67489 -32.98299 -29.98374 -28.86768 -24.74347 -23.91736 -22.24740 -21.50812 -18.87696 -17.70972 -17.07959 -16.58135 -16.15347 -15.61645 -14.96069 -14.71034 -14.51612 -14.32167 -14.04088 -13.40014 -13.20414 -13.05233 -12.66679 -12.58409 -12.30193 -12.11565 -11.98192 -11.73373 -11.69983 -11.47101 -10.82544 -10.79572 -9.12804 -8.69691 -8.30978 -6.34824 0.64188 1.32693 1.34669 1.45620 1.59862 2.32240 3.01719 3.28268 3.48549 3.61935 4.03896 4.06173 4.12686 4.28026 4.41085 4.54922 4.62026 4.71239 4.72802 4.88503 4.91179 4.93207 4.94778 5.00816 5.20549 5.24600 5.50727 5.93280 6.21389 6.55151 6.71145 7.29050 8.85762 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062186 B = 0.006358 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.154871 B = 4402.763220 C = 4617.659993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 S -0.285 6.285 4 C -0.052 4.052 5 H 0.107 0.893 6 C -0.121 4.121 7 C 0.053 3.947 8 N -0.535 5.535 9 C 0.169 3.831 10 C -0.518 4.518 11 H 0.038 0.962 12 C 0.011 3.989 13 N -0.946 5.946 14 Si 0.946 3.054 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.252 1.252 18 C 0.063 3.937 19 H 0.092 0.908 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.027 0.973 29 H -0.011 1.011 30 H 0.268 0.732 31 H 0.042 0.958 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.668 -7.930 -4.727 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.229 4.229 3 S -0.058 6.058 4 C -0.181 4.181 5 H 0.125 0.875 6 C -0.161 4.161 7 C -0.076 4.076 8 N -0.259 5.259 9 C 0.041 3.959 10 C -0.556 4.556 11 H 0.056 0.944 12 C -0.187 4.187 13 N -0.586 5.586 14 Si 0.769 3.231 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.176 1.176 18 C -0.066 4.066 19 H 0.110 0.890 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.006 0.994 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.768 -6.986 -5.051 20.653 hybrid contribution 0.612 -0.155 1.033 1.211 sum -18.156 -7.140 -4.017 19.919 Atomic orbital electron populations 1.21525 0.91170 1.03682 1.02808 1.23396 1.00759 0.92940 1.05791 1.86919 1.04615 1.16227 1.98029 1.24179 0.92571 0.99811 1.01523 0.87512 1.23097 0.95215 1.01832 0.95966 1.22661 0.96306 0.92294 0.96366 1.63508 1.24315 1.04359 1.33751 1.20115 0.94255 0.90538 0.90954 1.21216 0.95747 1.06821 1.31843 0.94411 1.25820 0.95550 1.01581 0.95732 1.70040 1.11797 1.37335 1.39471 0.85740 0.78974 0.78866 0.79542 1.19138 1.20337 1.17609 1.22847 0.88214 0.94983 1.00522 0.88954 0.92234 0.91952 0.89123 0.89371 0.88343 0.90634 0.91476 0.93985 0.95509 0.99380 0.92302 0.93999 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.92 71.98 0.71 -1.07 16 2 C -0.08 -1.34 6.55 71.98 0.47 -0.87 16 3 S -0.29 -6.98 21.20 -56.49 -1.20 -8.18 16 4 C -0.05 -1.41 3.56 31.98 0.11 -1.30 16 5 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 6 C -0.12 -3.35 6.31 31.77 0.20 -3.15 16 7 C 0.05 2.00 6.39 86.64 0.55 2.55 16 8 N -0.53 -22.81 5.15 -890.12 -4.58 -27.40 16 9 C 0.17 8.37 3.37 85.56 0.29 8.66 16 10 C -0.52 -30.62 9.22 25.60 0.24 -30.39 16 11 H 0.04 2.48 8.03 -2.91 -0.02 2.46 16 12 C 0.01 0.64 5.47 84.66 0.46 1.10 16 13 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 14 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 18 C 0.06 2.17 6.16 86.77 0.53 2.70 16 19 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 20 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 26 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.04 1.77 7.31 -2.39 -0.02 1.75 16 28 H 0.03 1.33 7.13 -2.39 -0.02 1.31 16 29 H -0.01 -0.56 7.39 -2.39 -0.02 -0.58 16 30 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.04 1.49 7.70 -2.39 -0.02 1.48 16 32 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -66.35 272.65 0.99 -65.37 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.01 Total: 4.75 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.58 Total: -21.75 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -4.28 Total: -86.77 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.20 Total: -8.18 kcal Total: -66.35 0.99 -65.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382862551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.889 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds