Wall clock time and date at job start Mon Mar 30 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47039 * 2 1 4 4 C 1.81401 * 103.00149 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.28765 * 305.70194 * 4 3 2 6 6 C 1.54262 * 110.32303 * 67.83027 * 4 3 2 7 7 C 1.54375 * 105.06151 * 118.99448 * 6 4 3 8 8 N 1.48556 * 104.59344 * 23.85777 * 7 6 4 9 9 C 1.46903 * 111.00051 * 200.95769 * 8 7 6 10 10 C 1.50700 * 109.47029 * 290.12426 * 9 8 7 11 11 H 1.08003 * 120.00278 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00305 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99418 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00299 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47021 * 59.99988 * 14 12 10 16 16 H 1.48499 * 109.47175 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46824 * 300.00546 * 14 12 10 18 18 C 1.48821 * 104.23766 * 320.48498 * 8 7 6 19 19 H 1.08996 * 109.47530 * 299.99698 * 1 2 3 20 20 H 1.09002 * 109.47065 * 60.00232 * 1 2 3 21 21 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47739 * 239.99809 * 2 1 3 23 23 H 1.09002 * 109.47065 * 119.99768 * 2 1 3 24 24 H 1.08997 * 110.32128 * 237.89874 * 6 4 3 25 25 H 1.09004 * 110.32088 * 359.97438 * 6 4 3 26 26 H 1.09009 * 110.40529 * 142.62988 * 7 6 4 27 27 H 1.08990 * 110.41629 * 265.06956 * 7 6 4 28 28 H 1.09001 * 109.46764 * 50.12109 * 9 8 7 29 29 H 1.08996 * 109.47572 * 170.12319 * 9 8 7 30 30 H 0.97002 * 119.99693 * 179.97438 * 13 12 10 31 31 H 1.09001 * 110.45345 * 280.77851 * 18 8 7 32 32 H 1.09001 * 110.49959 * 158.24614 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2451 0.8706 0.8313 6 6 4.4085 0.9029 -1.3386 7 6 5.3512 1.9637 -1.9463 8 7 5.8316 2.7493 -0.7806 9 6 6.3234 4.0681 -1.2012 10 6 7.6081 3.9030 -1.9716 11 1 8.0185 2.9170 -2.1323 12 6 8.2596 5.0106 -2.4713 13 7 7.7601 6.2113 -2.2752 14 14 9.8524 4.8059 -3.4255 15 1 9.6070 3.9633 -4.6234 16 1 10.3495 6.1390 -3.8508 17 1 10.8672 4.1526 -2.5603 18 6 4.6327 2.8812 0.0911 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 4.9478 -0.0283 -1.1655 25 1 3.5567 0.7294 -1.9962 26 1 6.1888 1.4828 -2.4518 27 1 4.8059 2.6051 -2.6384 28 1 5.5784 4.5482 -1.8358 29 1 6.5040 4.6861 -0.3217 30 1 8.2187 6.9906 -2.6264 31 1 3.9744 3.6654 -0.2827 32 1 4.9292 3.0904 1.1189 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382862552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:31 Heat of formation + Delta-G solvation = -8.265658 kcal Electronic energy + Delta-G solvation = -12431.415707 eV Core-core repulsion = 10324.633992 eV Total energy + Delta-G solvation = -2106.781716 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.04678 -33.16449 -32.87703 -31.00435 -28.40277 -26.43976 -23.76735 -22.47642 -20.50384 -20.12749 -16.59568 -16.01833 -15.64792 -15.19670 -14.74812 -14.31781 -13.57319 -13.43707 -12.88329 -12.53531 -12.22883 -11.76760 -11.68545 -11.54496 -11.19096 -11.05630 -10.78279 -10.66309 -10.53272 -10.35171 -9.84969 -9.61900 -9.21004 -8.43466 -7.57532 -7.45425 -6.02668 -4.04467 1.74902 2.67239 3.33971 3.37842 3.40843 4.43101 4.80597 4.83807 4.91088 4.97215 5.13480 5.26117 5.32902 5.42596 5.56364 5.64828 5.74652 5.90078 5.91780 6.05799 6.24699 6.29525 6.53994 6.59681 7.10912 7.28365 7.73553 7.95583 8.13886 8.47228 9.02485 9.59714 11.08485 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.079330 B = 0.005796 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.869947 B = 4829.461390 C = 4996.690918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 S -0.265 6.265 4 C -0.052 4.052 5 H 0.090 0.910 6 C -0.121 4.121 7 C 0.049 3.951 8 N -0.504 5.504 9 C 0.182 3.818 10 C -0.508 4.508 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.053 3.947 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.041 0.959 28 H -0.004 1.004 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.046 0.954 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 -11.426 3.459 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.239 4.239 3 S -0.039 6.039 4 C -0.181 4.181 5 H 0.108 0.892 6 C -0.161 4.161 7 C -0.080 4.080 8 N -0.229 5.229 9 C 0.056 3.944 10 C -0.547 4.547 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.076 4.076 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.013 0.987 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.181 -10.543 3.711 15.810 hybrid contribution 0.947 -0.628 -0.908 1.454 sum -10.235 -11.171 2.803 15.408 Atomic orbital electron populations 1.21502 0.92566 1.02163 1.03117 1.23262 0.99807 0.96152 1.04688 1.86924 1.06867 1.12193 1.97909 1.23961 0.91055 1.01837 1.01239 0.89187 1.22764 0.99485 0.99250 0.94596 1.22874 0.96778 0.94595 0.93741 1.65673 1.24151 1.19570 1.13541 1.19900 0.95154 0.83728 0.95586 1.21068 1.06919 0.93256 1.33449 0.91968 1.24994 0.97964 0.95129 0.96488 1.69955 1.39749 0.97902 1.46179 0.86537 0.83452 0.77089 0.80199 1.20265 1.21318 1.20144 1.22908 0.92111 0.92708 0.99916 0.91815 0.91754 0.91446 0.90236 0.90428 0.91247 0.91151 0.90213 0.94082 0.98653 0.95027 0.92827 0.93557 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.92 37.16 0.37 -0.82 16 2 C -0.09 -0.95 6.56 37.16 0.24 -0.71 16 3 S -0.27 -3.80 20.76 -107.50 -2.23 -6.03 16 4 C -0.05 -0.80 3.56 -25.34 -0.09 -0.89 16 5 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 6 C -0.12 -1.86 6.57 -25.35 -0.17 -2.03 16 7 C 0.05 0.96 5.97 -2.19 -0.01 0.95 16 8 N -0.50 -11.19 5.37 -231.18 -1.24 -12.43 16 9 C 0.18 4.86 4.57 -4.97 -0.02 4.83 16 10 C -0.51 -14.49 8.82 -34.44 -0.30 -14.79 16 11 H 0.06 1.75 7.61 -52.48 -0.40 1.35 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 14 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.05 1.00 6.06 -2.03 -0.01 0.99 16 19 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 23 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 26 H 0.08 1.59 7.94 -51.92 -0.41 1.17 16 27 H 0.04 0.85 7.82 -51.93 -0.41 0.45 16 28 H 0.00 -0.12 7.88 -51.93 -0.41 -0.53 16 29 H 0.03 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.05 0.93 7.68 -51.93 -0.40 0.53 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -29.89 275.54 -9.04 -38.93 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -5.34 Total: -4.16 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.09 Total: -10.97 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.50 Total: -38.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.23 Total: -6.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.89 -9.04 -38.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382862552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.667 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds