Wall clock time and date at job start Mon Mar 30 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47039 * 2 1 4 4 C 1.81401 * 103.00149 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.28765 * 305.70194 * 4 3 2 6 6 C 1.54262 * 110.32303 * 67.83027 * 4 3 2 7 7 C 1.54375 * 105.06151 * 118.99448 * 6 4 3 8 8 N 1.48556 * 104.59344 * 23.85777 * 7 6 4 9 9 C 1.46903 * 111.00051 * 200.95769 * 8 7 6 10 10 C 1.50700 * 109.47029 * 290.12426 * 9 8 7 11 11 H 1.08003 * 120.00278 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00305 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99418 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00299 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47021 * 59.99988 * 14 12 10 16 16 H 1.48499 * 109.47175 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46824 * 300.00546 * 14 12 10 18 18 C 1.48821 * 104.23766 * 320.48498 * 8 7 6 19 19 H 1.08996 * 109.47530 * 299.99698 * 1 2 3 20 20 H 1.09002 * 109.47065 * 60.00232 * 1 2 3 21 21 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47739 * 239.99809 * 2 1 3 23 23 H 1.09002 * 109.47065 * 119.99768 * 2 1 3 24 24 H 1.08997 * 110.32128 * 237.89874 * 6 4 3 25 25 H 1.09004 * 110.32088 * 359.97438 * 6 4 3 26 26 H 1.09009 * 110.40529 * 142.62988 * 7 6 4 27 27 H 1.08990 * 110.41629 * 265.06956 * 7 6 4 28 28 H 1.09001 * 109.46764 * 50.12109 * 9 8 7 29 29 H 1.08996 * 109.47572 * 170.12319 * 9 8 7 30 30 H 0.97002 * 119.99693 * 179.97438 * 13 12 10 31 31 H 1.09001 * 110.45345 * 280.77851 * 18 8 7 32 32 H 1.09001 * 110.49959 * 158.24614 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2451 0.8706 0.8313 6 6 4.4085 0.9029 -1.3386 7 6 5.3512 1.9637 -1.9463 8 7 5.8316 2.7493 -0.7806 9 6 6.3234 4.0681 -1.2012 10 6 7.6081 3.9030 -1.9716 11 1 8.0185 2.9170 -2.1323 12 6 8.2596 5.0106 -2.4713 13 7 7.7601 6.2113 -2.2752 14 14 9.8524 4.8059 -3.4255 15 1 9.6070 3.9633 -4.6234 16 1 10.3495 6.1390 -3.8508 17 1 10.8672 4.1526 -2.5603 18 6 4.6327 2.8812 0.0911 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 4.9478 -0.0283 -1.1655 25 1 3.5567 0.7294 -1.9962 26 1 6.1888 1.4828 -2.4518 27 1 4.8059 2.6051 -2.6384 28 1 5.5784 4.5482 -1.8358 29 1 6.5040 4.6861 -0.3217 30 1 8.2187 6.9906 -2.6264 31 1 3.9744 3.6654 -0.2827 32 1 4.9292 3.0904 1.1189 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382862552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:31 Heat of formation + Delta-G solvation = -27.341427 kcal Electronic energy + Delta-G solvation = -12432.242895 eV Core-core repulsion = 10324.633992 eV Total energy + Delta-G solvation = -2107.608903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65450 -35.22085 -33.66788 -32.78356 -29.90600 -28.44261 -24.97874 -24.06468 -21.88933 -21.84275 -18.54075 -17.54457 -17.06646 -16.67439 -16.04791 -15.55517 -15.18859 -14.97476 -14.38703 -14.13433 -13.51030 -13.29368 -12.99296 -12.87243 -12.77872 -12.53666 -12.44596 -12.23095 -12.01599 -11.91374 -11.62825 -11.32222 -10.72527 -10.63484 -9.30789 -8.69392 -8.23345 -6.34692 0.67049 1.40536 1.44434 1.52490 1.63040 2.39319 3.09294 3.41522 3.51403 3.64064 4.05894 4.09030 4.14653 4.30651 4.49035 4.56042 4.68819 4.73986 4.83037 4.89708 4.94516 4.97771 5.03607 5.11448 5.22318 5.25702 5.59007 5.91996 6.13882 6.40324 6.79987 7.35400 8.88382 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.079330 B = 0.005796 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.869947 B = 4829.461390 C = 4996.690918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 S -0.304 6.304 4 C -0.041 4.041 5 H 0.109 0.891 6 C -0.106 4.106 7 C 0.045 3.955 8 N -0.513 5.513 9 C 0.198 3.802 10 C -0.527 4.527 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.974 3.026 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.051 3.949 19 H 0.060 0.940 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.020 0.980 28 H -0.037 1.037 29 H 0.003 0.997 30 H 0.266 0.734 31 H 0.028 0.972 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 -13.825 3.309 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.226 4.226 3 S -0.078 6.078 4 C -0.170 4.170 5 H 0.127 0.873 6 C -0.146 4.146 7 C -0.083 4.083 8 N -0.238 5.238 9 C 0.071 3.929 10 C -0.565 4.565 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.078 4.078 19 H 0.079 0.921 20 H 0.076 0.924 21 H 0.112 0.888 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.039 0.961 28 H -0.019 1.019 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.286 -12.963 3.570 17.554 hybrid contribution 0.874 0.105 -0.823 1.205 sum -10.412 -12.858 2.747 16.771 Atomic orbital electron populations 1.21526 0.91283 1.03683 1.02700 1.23393 1.00648 0.92633 1.05907 1.87135 1.05939 1.16728 1.98017 1.23777 0.91812 0.99407 1.01971 0.87305 1.22703 0.99117 0.98449 0.94297 1.22910 0.97408 0.95115 0.92888 1.65549 1.26392 1.16986 1.14838 1.19532 0.94297 0.85550 0.93537 1.21383 1.07647 0.93544 1.33956 0.91747 1.25980 1.01800 0.94593 0.97339 1.70094 1.41494 0.98843 1.47150 0.85365 0.78587 0.77387 0.78861 1.19057 1.20743 1.19146 1.22923 0.90989 0.94782 0.99151 0.92110 0.92376 0.88784 0.89171 0.88985 0.88782 0.89554 0.90639 0.96127 1.01887 0.97898 0.92569 0.95418 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.92 71.98 0.71 -1.23 16 2 C -0.08 -1.38 6.56 71.98 0.47 -0.91 16 3 S -0.30 -8.25 20.76 -56.49 -1.17 -9.42 16 4 C -0.04 -1.19 3.56 31.49 0.11 -1.08 16 5 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 6 C -0.11 -3.03 6.57 31.49 0.21 -2.82 16 7 C 0.05 1.79 5.97 86.45 0.52 2.30 16 8 N -0.51 -23.24 5.37 -885.32 -4.75 -27.99 16 9 C 0.20 11.05 4.57 85.56 0.39 11.44 16 10 C -0.53 -30.69 8.82 25.60 0.23 -30.47 16 11 H 0.06 3.64 7.61 -2.91 -0.02 3.62 16 12 C 0.00 0.06 5.46 84.65 0.46 0.52 16 13 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 14 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.05 1.94 6.06 86.40 0.52 2.46 16 19 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 20 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 23 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.09 2.22 7.46 -2.39 -0.02 2.20 16 26 H 0.08 2.99 7.94 -2.38 -0.02 2.97 16 27 H 0.02 0.88 7.82 -2.39 -0.02 0.86 16 28 H -0.04 -2.22 7.88 -2.39 -0.02 -2.24 16 29 H 0.00 0.18 8.13 -2.39 -0.02 0.16 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.03 1.16 7.68 -2.39 -0.02 1.14 16 32 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -65.80 275.54 1.07 -64.73 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.06 Total: 3.02 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 3.62 Total: -19.77 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -4.47 Total: -85.30 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.17 Total: -9.42 kcal Total: -65.80 1.07 -64.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382862552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.385 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds