Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99640 * 3 2 1 5 5 H 1.48499 * 109.46915 * 29.99299 * 3 2 1 6 6 H 1.48497 * 109.47614 * 149.99846 * 3 2 1 7 7 C 1.37884 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99496 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 179.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.47488 * 110.99898 * 74.02885 * 13 12 11 15 15 C 1.53514 * 87.93091 * 138.70496 * 14 13 12 16 16 C 1.53004 * 114.16785 * 220.32981 * 15 14 13 17 17 O 1.42898 * 109.47157 * 268.83946 * 16 15 14 18 18 C 1.47481 * 111.00017 * 169.99694 * 13 12 11 19 19 H 0.97003 * 119.99801 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 21 21 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 22 22 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 23 23 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 24 24 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 25 25 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 26 26 H 1.08997 * 113.47402 * 253.47029 * 14 13 12 27 27 H 1.09004 * 113.47408 * 23.93601 * 14 13 12 28 28 H 1.08999 * 114.34558 * 87.63744 * 15 14 13 29 29 H 1.09004 * 109.47324 * 28.84068 * 16 15 14 30 30 H 1.09004 * 109.46804 * 148.83948 * 16 15 14 31 31 H 0.96696 * 113.99753 * 180.02562 * 17 16 15 32 32 H 1.09003 * 113.47525 * 336.07029 * 18 13 12 33 33 H 1.09001 * 113.47256 * 106.53396 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6542 0.0001 12 6 5.8069 -4.1325 -0.0004 13 7 5.3676 -4.7561 -1.2558 14 6 6.2251 -4.3395 -2.3812 15 6 6.1795 -5.7905 -2.8804 16 6 7.5139 -6.3096 -3.4199 17 8 7.5885 -6.0611 -4.8251 18 6 5.9332 -6.1106 -1.3993 19 1 -0.4850 0.8401 -0.0004 20 1 3.8752 -0.6798 0.8895 21 1 3.8746 -0.6807 -0.8904 22 1 5.8152 -2.1705 0.8900 23 1 5.8152 -2.1707 -0.8899 24 1 5.3311 -4.6358 0.8412 25 1 6.8897 -4.2195 0.0892 26 1 5.7426 -3.6327 -3.0562 27 1 7.2198 -4.0173 -2.0731 28 1 5.3352 -6.0152 -3.5320 29 1 8.3336 -5.7970 -2.9163 30 1 7.5879 -7.3814 -3.2360 31 1 8.4097 -6.3653 -5.2352 32 1 6.8499 -6.2610 -0.8291 33 1 5.2032 -6.9047 -1.2423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385172560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = -58.804243 kcal Electronic energy + Delta-G solvation = -14336.824805 eV Core-core repulsion = 11785.098701 eV Total energy + Delta-G solvation = -2551.726104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.28260 -37.00902 -36.47670 -32.74414 -31.74846 -28.64124 -27.25969 -25.99666 -24.10121 -21.78669 -21.00998 -19.81443 -17.54176 -16.81398 -16.06621 -15.93087 -15.65519 -14.84476 -14.61034 -14.23248 -13.84912 -13.32310 -12.75890 -12.66928 -12.54823 -12.00384 -11.78698 -11.20814 -10.96894 -10.93326 -10.73092 -10.53041 -10.34657 -10.08784 -9.81582 -9.11673 -8.80462 -8.70617 -8.39643 -6.06003 -4.04267 3.28178 3.34586 3.36269 3.83493 4.04449 4.38175 4.40074 4.65474 4.86355 5.06011 5.10795 5.21657 5.25165 5.32901 5.36590 5.38484 5.55181 5.67924 5.76371 5.89230 5.94282 6.14471 6.21833 6.46461 6.65387 7.05428 7.16441 7.37963 7.65898 8.10285 8.74234 9.07382 9.53687 11.07257 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.047734 B = 0.005355 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.445505 B = 5227.029383 C = 5320.877656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.366 6.366 11 C 0.064 3.936 12 C 0.025 3.975 13 N -0.450 5.450 14 C 0.003 3.997 15 C -0.117 4.117 16 C 0.087 3.913 17 O -0.570 6.570 18 C 0.003 3.997 19 H 0.266 0.734 20 H 0.000 1.000 21 H -0.004 1.004 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.377 0.623 32 H 0.065 0.935 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.318 -10.909 -4.280 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.284 6.284 11 C -0.014 4.014 12 C -0.104 4.104 13 N -0.172 5.172 14 C -0.126 4.126 15 C -0.135 4.135 16 C 0.009 3.991 17 O -0.375 6.375 18 C -0.126 4.126 19 H 0.076 0.924 20 H 0.018 0.982 21 H 0.014 0.986 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.083 0.917 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.688 -10.543 -4.125 20.166 hybrid contribution 2.048 0.920 0.127 2.249 sum 18.737 -9.624 -3.997 21.440 Atomic orbital electron populations 1.69882 1.06040 1.26978 1.50642 1.24768 0.94789 0.98679 0.94754 0.86853 0.80306 0.83848 0.78734 1.19955 1.20806 1.19207 1.20908 0.88298 0.95335 1.50775 0.89887 1.20589 0.96240 0.79863 0.94072 1.88010 1.16698 1.28846 1.94878 1.22239 0.85856 0.94354 0.98932 1.22698 0.97185 0.95998 0.94482 1.69101 1.43058 1.02230 1.02843 1.23904 0.96474 0.97232 0.94975 1.22741 0.97894 0.96801 0.96109 1.22175 0.96717 0.98699 0.81524 1.86538 1.43920 1.85261 1.21820 1.23835 0.99093 0.95192 0.94506 0.92431 0.98210 0.98592 0.94092 0.94557 0.89612 0.93535 0.89356 0.91722 0.87109 0.93721 0.93370 0.77675 0.91652 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 2 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.92 9.99 -34.44 -0.34 -16.26 16 8 H 0.08 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.17 4.46 4.76 36.00 0.17 4.63 16 10 O -0.37 -9.02 10.27 -35.23 -0.36 -9.38 16 11 C 0.06 1.19 6.12 37.16 0.23 1.41 16 12 C 0.02 0.37 5.21 -3.83 -0.02 0.36 16 13 N -0.45 -7.04 6.36 -244.61 -1.56 -8.60 16 14 C 0.00 0.04 6.50 -7.54 -0.05 -0.01 16 15 C -0.12 -1.35 4.35 -90.09 -0.39 -1.74 16 16 C 0.09 0.77 6.96 37.16 0.26 1.03 16 17 O -0.57 -5.56 13.66 -35.23 -0.48 -6.04 16 18 C 0.00 0.03 7.29 -7.54 -0.05 -0.02 16 19 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 20 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 21 H 0.00 -0.09 7.57 -51.93 -0.39 -0.49 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.65 7.55 -51.93 -0.39 0.25 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.05 0.55 7.56 -51.93 -0.39 0.16 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 0.76 7.43 -51.93 -0.39 0.37 16 28 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.04 0.35 7.81 -51.93 -0.41 -0.06 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.38 1.79 9.12 45.56 0.42 2.21 16 32 H 0.07 0.62 7.73 -51.93 -0.40 0.21 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 276.30 15.07 4.16 4.16 Total: -1.00 -34.99 276.30 -6.89 -41.87 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.45 Total: -3.18 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.30 Total: -8.53 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.78 Total: -36.20 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.84 Total: -15.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.99 -6.89 -41.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385172560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.931 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds