Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48501 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47281 * 300.00158 * 3 2 1 6 6 H 1.48505 * 109.46861 * 60.00313 * 3 2 1 7 7 C 1.37885 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99719 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00124 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47222 * 180.02562 * 11 10 9 13 13 O 1.42891 * 109.47175 * 64.99681 * 12 11 10 14 14 C 1.42905 * 113.99873 * 179.97438 * 13 12 11 15 15 C 1.53786 * 113.61467 * 110.86351 * 14 13 12 16 16 C 1.53962 * 87.01719 * 89.22967 * 15 14 13 17 17 N 1.46897 * 113.66226 * 139.93465 * 16 15 14 18 18 C 1.53781 * 113.61505 * 208.47211 * 14 13 12 19 19 H 0.97005 * 120.00318 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47138 * 60.00295 * 9 7 2 21 21 H 1.08997 * 109.47162 * 300.00138 * 9 7 2 22 22 H 1.09001 * 109.47195 * 59.99587 * 11 10 9 23 23 H 1.09000 * 109.46717 * 300.00174 * 11 10 9 24 24 H 1.08999 * 109.46770 * 304.99477 * 12 11 10 25 25 H 1.09002 * 109.47149 * 185.00367 * 12 11 10 26 26 H 1.09002 * 112.84917 * 339.66862 * 14 13 12 27 27 H 1.08993 * 113.61491 * 203.75088 * 15 14 13 28 28 H 1.09000 * 113.61138 * 334.65426 * 15 14 13 29 29 H 1.09002 * 113.61454 * 270.79954 * 16 15 14 30 30 H 1.00900 * 111.00026 * 82.44380 * 17 16 15 31 31 H 1.00908 * 110.99751 * 206.39262 * 17 16 15 32 32 H 1.09001 * 113.61695 * 25.34840 * 18 14 13 33 33 H 1.08997 * 113.61223 * 156.25423 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0004 13 8 3.3863 -5.8898 1.2211 14 6 4.4279 -6.8628 1.3242 15 6 5.8417 -6.2604 1.2661 16 6 5.7556 -6.1154 2.7965 17 7 7.0082 -6.4414 3.4910 18 6 4.7452 -7.2744 2.7715 19 1 -0.4851 0.8401 -0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 0.9451 -4.9822 -0.8913 23 1 0.9445 -4.9826 0.8886 24 1 3.3220 -5.7956 -0.8418 25 1 2.1819 -6.9375 -0.0905 26 1 4.2855 -7.7082 0.6510 27 1 6.6039 -6.9664 0.9367 28 1 5.8890 -5.3079 0.7384 29 1 5.3254 -5.1681 3.1218 30 1 7.6408 -5.6554 3.4840 31 1 6.8285 -6.7525 4.4340 32 1 3.9088 -7.1394 3.4573 33 1 5.2072 -8.2582 2.8543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385214295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = -77.477049 kcal Electronic energy + Delta-G solvation = -14295.264210 eV Core-core repulsion = 11742.728392 eV Total energy + Delta-G solvation = -2552.535818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.42137 -37.02011 -35.65936 -32.71880 -31.64940 -29.28750 -26.77148 -25.68884 -23.30536 -22.40480 -21.91238 -19.36896 -16.76602 -16.37341 -15.95668 -15.64538 -15.44380 -15.14627 -14.64298 -14.11896 -13.88020 -13.58554 -12.60974 -12.30664 -12.03770 -11.84830 -11.44611 -11.33008 -10.82514 -10.78351 -10.56007 -10.40543 -10.37678 -9.98156 -9.28026 -9.05979 -8.81767 -8.80348 -8.15073 -6.09222 -4.10367 3.30260 3.36476 3.43452 3.74772 4.36319 4.49998 4.58188 4.73018 4.84387 4.93837 5.21066 5.27328 5.32689 5.52175 5.62135 5.74228 5.82246 5.95891 6.02452 6.10609 6.17788 6.25460 6.29284 7.09263 7.11773 7.31595 7.44856 7.50597 7.82074 8.17542 8.60500 9.03581 9.54325 11.02528 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033534 B = 0.005853 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.769698 B = 4782.426866 C = 5400.855267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.353 6.353 14 C 0.063 3.937 15 C -0.149 4.149 16 C 0.062 3.938 17 N -0.843 5.843 18 C -0.134 4.134 19 H 0.263 0.737 20 H 0.005 0.995 21 H 0.005 0.995 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.338 0.662 32 H 0.073 0.927 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -14.046 3.568 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.272 6.272 14 C 0.004 3.996 15 C -0.187 4.187 16 C -0.049 4.049 17 N -0.372 5.372 18 C -0.171 4.171 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.379 -14.304 3.147 16.873 hybrid contribution -0.243 1.488 0.460 1.577 sum 8.136 -12.815 3.607 15.602 Atomic orbital electron populations 1.69973 1.06102 1.27007 1.50803 1.24951 0.94975 0.99424 0.95201 0.86287 0.80040 0.82603 0.77609 1.19491 1.20827 1.20841 1.21100 0.94106 0.89350 1.50473 0.91520 1.20217 0.88818 0.83705 0.95345 1.87915 1.35149 1.12640 1.95158 1.22265 0.93722 0.85669 0.99812 1.22639 0.93878 0.97177 0.87109 1.88024 1.46345 1.54669 1.38166 1.22829 0.88219 0.91373 0.97186 1.23554 0.96904 1.02364 0.95891 1.22820 0.89549 0.97460 0.95029 1.58938 1.14395 1.41635 1.22254 1.23274 0.98456 0.98754 0.96655 0.92737 0.97750 0.97670 0.92953 0.93713 0.92677 0.92733 0.91041 0.89033 0.90616 0.91216 0.84788 0.84940 0.90816 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -15.50 9.43 -34.44 -0.32 -15.82 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.48 5.69 36.00 0.20 5.69 16 10 O -0.39 -9.87 10.29 -40.09 -0.41 -10.28 16 11 C 0.06 1.22 6.32 37.16 0.23 1.46 16 12 C 0.07 1.09 6.16 37.16 0.23 1.32 16 13 O -0.35 -6.09 10.24 -40.09 -0.41 -6.50 16 14 C 0.06 0.84 4.36 -25.92 -0.11 0.72 16 15 C -0.15 -1.93 7.73 -25.82 -0.20 -2.13 16 16 C 0.06 0.78 4.90 -66.81 -0.33 0.46 16 17 N -0.84 -8.63 9.58 -3.90 -0.04 -8.66 16 18 C -0.13 -1.55 7.70 -25.92 -0.20 -1.75 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.34 3.16 9.08 -39.29 -0.36 2.80 16 31 H 0.34 2.91 9.07 -39.29 -0.36 2.55 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 283.71 15.07 4.28 4.28 Total: -1.00 -32.71 283.71 -6.78 -39.49 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.32 Total: -0.37 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.59 Total: -8.54 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.70 Total: -35.26 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.82 Total: -16.78 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.71 -6.78 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.990 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds