Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48501 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47281 * 300.00158 * 3 2 1 6 6 H 1.48505 * 109.46861 * 60.00313 * 3 2 1 7 7 C 1.37885 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99719 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00124 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47222 * 180.02562 * 11 10 9 13 13 O 1.42891 * 109.47175 * 64.99681 * 12 11 10 14 14 C 1.42905 * 113.99873 * 179.97438 * 13 12 11 15 15 C 1.53786 * 113.61467 * 110.86351 * 14 13 12 16 16 C 1.53962 * 87.01719 * 89.22967 * 15 14 13 17 17 N 1.46897 * 113.66226 * 139.93465 * 16 15 14 18 18 C 1.53781 * 113.61505 * 208.47211 * 14 13 12 19 19 H 0.97005 * 120.00318 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47138 * 60.00295 * 9 7 2 21 21 H 1.08997 * 109.47162 * 300.00138 * 9 7 2 22 22 H 1.09001 * 109.47195 * 59.99587 * 11 10 9 23 23 H 1.09000 * 109.46717 * 300.00174 * 11 10 9 24 24 H 1.08999 * 109.46770 * 304.99477 * 12 11 10 25 25 H 1.09002 * 109.47149 * 185.00367 * 12 11 10 26 26 H 1.09002 * 112.84917 * 339.66862 * 14 13 12 27 27 H 1.08993 * 113.61491 * 203.75088 * 15 14 13 28 28 H 1.09000 * 113.61138 * 334.65426 * 15 14 13 29 29 H 1.09002 * 113.61454 * 270.79954 * 16 15 14 30 30 H 1.00900 * 111.00026 * 82.44380 * 17 16 15 31 31 H 1.00908 * 110.99751 * 206.39262 * 17 16 15 32 32 H 1.09001 * 113.61695 * 25.34840 * 18 14 13 33 33 H 1.08997 * 113.61223 * 156.25423 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0004 13 8 3.3863 -5.8898 1.2211 14 6 4.4279 -6.8628 1.3242 15 6 5.8417 -6.2604 1.2661 16 6 5.7556 -6.1154 2.7965 17 7 7.0082 -6.4414 3.4910 18 6 4.7452 -7.2744 2.7715 19 1 -0.4851 0.8401 -0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 0.9451 -4.9822 -0.8913 23 1 0.9445 -4.9826 0.8886 24 1 3.3220 -5.7956 -0.8418 25 1 2.1819 -6.9375 -0.0905 26 1 4.2855 -7.7082 0.6510 27 1 6.6039 -6.9664 0.9367 28 1 5.8890 -5.3079 0.7384 29 1 5.3254 -5.1681 3.1218 30 1 7.6408 -5.6554 3.4840 31 1 6.8285 -6.7525 4.4340 32 1 3.9088 -7.1394 3.4573 33 1 5.2072 -8.2582 2.8543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385214295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = -102.410980 kcal Electronic energy + Delta-G solvation = -14296.345426 eV Core-core repulsion = 11742.728392 eV Total energy + Delta-G solvation = -2553.617034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48968 -38.72728 -37.04368 -34.94025 -32.63353 -30.88217 -28.86071 -26.66765 -24.57567 -24.31215 -23.43097 -20.41005 -18.69771 -17.83773 -17.62457 -16.75751 -16.58377 -16.49897 -16.34424 -15.73758 -15.40367 -15.12598 -14.26284 -13.69577 -13.28755 -13.19564 -13.08208 -12.82870 -12.71808 -12.53409 -12.28430 -11.79358 -11.47190 -11.39456 -11.29148 -10.91135 -10.41018 -10.26660 -9.70347 -8.34811 -6.47317 1.37810 1.39637 1.54379 2.32999 2.62636 2.98716 3.16357 3.61243 3.63510 3.73546 3.87837 4.13755 4.21015 4.27987 4.43166 4.54174 4.59300 4.73513 4.83352 4.86283 4.88140 5.05716 5.13768 5.18919 5.26983 5.52073 5.93221 6.20823 6.37426 6.51803 6.56688 6.79572 7.24715 8.77906 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033534 B = 0.005853 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.769698 B = 4782.426866 C = 5400.855267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.074 3.926 13 O -0.389 6.389 14 C 0.054 3.946 15 C -0.148 4.148 16 C 0.059 3.941 17 N -0.836 5.836 18 C -0.121 4.121 19 H 0.272 0.728 20 H -0.009 1.009 21 H -0.016 1.016 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.345 0.655 31 H 0.349 0.651 32 H 0.067 0.933 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.263 -14.700 3.551 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.027 4.027 12 C -0.002 4.002 13 O -0.308 6.308 14 C -0.004 4.004 15 C -0.186 4.186 16 C -0.053 4.053 17 N -0.367 5.367 18 C -0.158 4.158 19 H 0.081 0.919 20 H 0.009 0.991 21 H 0.001 0.999 22 H 0.089 0.911 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.352 -14.988 3.136 17.942 hybrid contribution -0.559 1.604 0.484 1.766 sum 8.793 -13.384 3.620 16.418 Atomic orbital electron populations 1.70068 1.07720 1.28671 1.50425 1.25968 0.96001 1.03372 0.93792 0.85126 0.78526 0.77214 0.78468 1.19065 1.19263 1.19529 1.21402 0.93964 0.90982 1.52410 0.92398 1.19853 0.88642 0.84726 0.93549 1.87868 1.35413 1.14342 1.95225 1.22680 0.95547 0.83913 1.00577 1.22652 0.93135 0.97558 0.86862 1.87974 1.47607 1.56585 1.38663 1.23090 0.87073 0.91357 0.98904 1.23563 0.97618 1.01525 0.95896 1.22699 0.90704 0.96774 0.95074 1.58927 1.13183 1.41642 1.22942 1.23247 0.97838 0.99318 0.95417 0.91935 0.99105 0.99857 0.91115 0.93951 0.92536 0.88344 0.88289 0.87186 0.93253 0.94286 0.84236 0.83756 0.91390 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.98 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -34.08 9.43 25.60 0.24 -33.84 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 12.17 5.69 71.24 0.41 12.57 16 10 O -0.41 -21.30 10.29 -144.33 -1.49 -22.78 16 11 C 0.05 1.92 6.32 71.98 0.45 2.38 16 12 C 0.07 2.25 6.16 71.98 0.44 2.69 16 13 O -0.39 -13.18 10.24 -144.33 -1.48 -14.66 16 14 C 0.05 1.34 4.36 31.12 0.14 1.48 16 15 C -0.15 -3.71 7.73 31.18 0.24 -3.47 16 16 C 0.06 1.44 4.90 45.50 0.22 1.67 16 17 N -0.84 -15.91 9.58 -166.24 -1.59 -17.50 16 18 C -0.12 -2.58 7.70 31.12 0.24 -2.34 16 19 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 20 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 21 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.10 1.89 7.88 -2.39 -0.02 1.88 16 27 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.35 6.06 9.08 -89.69 -0.81 5.24 16 31 H 0.35 5.40 9.07 -89.69 -0.81 4.59 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -71.10 283.71 0.07 -71.03 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -0.53 Total: 11.05 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 2.85 Total: -17.97 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.31 Total: -74.06 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -2.96 Total: -37.44 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.10 0.07 -71.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385214295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.377 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds