Wall clock time and date at job start Mon Mar 30 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46748 * 65.00172 * 12 11 10 14 14 C 1.46904 * 110.99557 * 180.02562 * 13 12 11 15 15 H 1.09003 * 110.75525 * 37.01364 * 14 13 12 16 16 C 1.55303 * 110.84954 * 160.71400 * 14 13 12 17 17 C 1.54948 * 100.94519 * 152.31883 * 16 14 13 18 18 O 1.43651 * 105.13328 * 323.55591 * 17 16 14 19 19 C 1.43237 * 109.97058 * 24.42938 * 18 17 16 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 24 24 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 25 25 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 26 26 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 27 27 H 1.00895 * 111.00177 * 56.04793 * 13 12 11 28 28 H 1.08996 * 111.12415 * 270.24241 * 16 14 13 29 29 H 1.09007 * 111.12298 * 34.40258 * 16 14 13 30 30 H 1.08997 * 110.31070 * 204.64121 * 17 16 14 31 31 H 1.08998 * 110.30593 * 82.47263 * 17 16 14 32 32 H 1.09002 * 109.82699 * 238.77084 * 19 18 17 33 33 H 1.09000 * 109.90480 * 117.84569 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 7 3.4091 -5.8876 1.2551 14 6 4.4607 -6.9128 1.2897 15 1 4.9017 -7.0472 0.3020 16 6 5.5467 -6.5554 2.3408 17 6 6.0643 -7.9658 2.7202 18 8 4.9030 -8.8109 2.6943 19 6 3.9079 -8.2488 1.8309 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 0.9453 -4.9821 0.8913 24 1 0.9447 -4.9827 -0.8887 25 1 2.1822 -6.9374 -0.0887 26 1 3.3210 -5.7957 -0.8419 27 1 2.7978 -5.9691 2.0537 28 1 6.3390 -5.9523 1.8976 29 1 5.1085 -6.0527 3.2031 30 1 6.5005 -7.9527 3.7190 31 1 6.7979 -8.3084 1.9905 32 1 2.9906 -8.0693 2.3917 33 1 3.7080 -8.9288 1.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385807419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:18 Heat of formation + Delta-G solvation = -100.263606 kcal Electronic energy + Delta-G solvation = -14294.718347 eV Core-core repulsion = 11741.194430 eV Total energy + Delta-G solvation = -2553.523917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66715 -37.17089 -35.34276 -32.96370 -31.35851 -29.41205 -27.22807 -25.92894 -22.69982 -22.46100 -21.64764 -21.22547 -17.01046 -16.95603 -16.48486 -15.81878 -15.27906 -15.00901 -14.23430 -13.84931 -13.70763 -13.56913 -13.35067 -12.62610 -12.24447 -12.01503 -11.67298 -11.58902 -11.20829 -11.11326 -10.95394 -10.67818 -10.16515 -10.08403 -9.76799 -8.83337 -8.61596 -8.33607 -8.21049 -6.44370 -4.12330 3.44322 3.48621 3.60225 3.65241 4.16201 4.39988 4.45259 4.69028 4.73891 4.90644 4.99657 5.10686 5.33626 5.36510 5.42537 5.50246 5.54608 5.59079 5.82950 5.85434 5.92709 5.98432 6.16085 6.75093 6.77110 7.00976 7.14970 7.36823 7.93133 8.21411 8.67983 8.84173 9.58308 10.96011 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.049667 B = 0.005073 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.624306 B = 5518.506951 C = 5932.512950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.082 2.918 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.593 4.593 8 H 0.061 0.939 9 C 0.184 3.816 10 O -0.372 6.372 11 C 0.061 3.939 12 C 0.064 3.936 13 N -0.662 5.662 14 C 0.056 3.944 15 H 0.094 0.906 16 C -0.145 4.145 17 C 0.048 3.952 18 O -0.386 6.386 19 C 0.021 3.979 20 H 0.266 0.734 21 H -0.006 1.006 22 H -0.007 1.007 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.343 0.657 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 -15.115 2.871 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.187 4.187 3 Si 0.909 3.091 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.631 4.631 8 H 0.079 0.921 9 C 0.109 3.891 10 O -0.291 6.291 11 C -0.017 4.017 12 C -0.065 4.065 13 N -0.293 5.293 14 C -0.055 4.055 15 H 0.112 0.888 16 C -0.183 4.183 17 C -0.028 4.028 18 O -0.305 6.305 19 C -0.058 4.058 20 H 0.076 0.924 21 H 0.011 0.989 22 H 0.010 0.990 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.468 -13.123 2.743 15.857 hybrid contribution -0.779 -2.425 0.007 2.547 sum 7.689 -15.547 2.750 17.561 Atomic orbital electron populations 1.70776 1.06857 1.30382 1.46966 1.25937 0.96413 1.02704 0.93641 0.83367 0.74566 0.74257 0.76900 1.21252 1.21233 1.20895 1.21932 0.95504 0.90375 1.55301 0.92067 1.20287 0.89498 0.85366 0.93900 1.87990 1.34028 1.12124 1.94929 1.22286 0.94009 0.86377 0.99005 1.22036 0.95837 0.95747 0.92896 1.60330 1.16232 1.48063 1.04693 1.23194 0.93702 0.88655 0.99939 0.88802 1.23240 0.98636 0.96822 0.99626 1.23423 0.88465 0.89190 1.01748 1.88382 1.26549 1.48215 1.67346 1.24006 0.92197 0.95942 0.93664 0.92354 0.98869 0.98977 0.94686 0.94015 0.94518 0.90132 0.83745 0.89338 0.89731 0.89657 0.92195 0.91437 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.34 13.65 55.43 0.76 -27.59 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.08 25.85 29.90 -169.99 -5.08 20.77 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.59 -17.99 9.43 -34.44 -0.32 -18.31 16 8 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.18 5.12 5.00 36.01 0.18 5.30 16 10 O -0.37 -9.15 10.27 -35.23 -0.36 -9.51 16 11 C 0.06 1.12 6.22 37.16 0.23 1.35 16 12 C 0.06 0.92 5.93 -3.82 -0.02 0.90 16 13 N -0.66 -9.44 6.31 -104.67 -0.66 -10.10 16 14 C 0.06 0.66 3.29 -65.76 -0.22 0.44 16 15 H 0.09 1.05 7.91 -51.93 -0.41 0.64 16 16 C -0.15 -1.57 6.85 -24.48 -0.17 -1.73 16 17 C 0.05 0.47 7.78 38.19 0.30 0.77 16 18 O -0.39 -4.74 11.36 -35.23 -0.40 -5.14 16 19 C 0.02 0.23 7.46 37.88 0.28 0.51 16 20 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 21 H -0.01 -0.18 8.01 -51.93 -0.42 -0.60 16 22 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.43 8.13 -51.93 -0.42 0.00 16 26 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 27 H 0.34 4.63 8.16 -39.29 -0.32 4.31 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -33.25 278.14 -6.65 -39.91 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.26 Total: -2.12 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.16 Total: -10.41 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.10 Total: -37.68 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.76 Total: -14.65 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.25 -6.65 -39.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385807419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.357 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds