Wall clock time and date at job start Mon Mar 30 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46748 * 65.00172 * 12 11 10 14 14 C 1.46904 * 110.99557 * 180.02562 * 13 12 11 15 15 H 1.09003 * 110.75525 * 37.01364 * 14 13 12 16 16 C 1.55303 * 110.84954 * 160.71400 * 14 13 12 17 17 C 1.54948 * 100.94519 * 152.31883 * 16 14 13 18 18 O 1.43651 * 105.13328 * 323.55591 * 17 16 14 19 19 C 1.43237 * 109.97058 * 24.42938 * 18 17 16 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 24 24 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 25 25 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 26 26 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 27 27 H 1.00895 * 111.00177 * 56.04793 * 13 12 11 28 28 H 1.08996 * 111.12415 * 270.24241 * 16 14 13 29 29 H 1.09007 * 111.12298 * 34.40258 * 16 14 13 30 30 H 1.08997 * 110.31070 * 204.64121 * 17 16 14 31 31 H 1.08998 * 110.30593 * 82.47263 * 17 16 14 32 32 H 1.09002 * 109.82699 * 238.77084 * 19 18 17 33 33 H 1.09000 * 109.90480 * 117.84569 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 7 3.4091 -5.8876 1.2551 14 6 4.4607 -6.9128 1.2897 15 1 4.9017 -7.0472 0.3020 16 6 5.5467 -6.5554 2.3408 17 6 6.0643 -7.9658 2.7202 18 8 4.9030 -8.8109 2.6943 19 6 3.9079 -8.2488 1.8309 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 0.9453 -4.9821 0.8913 24 1 0.9447 -4.9827 -0.8887 25 1 2.1822 -6.9374 -0.0887 26 1 3.3210 -5.7957 -0.8419 27 1 2.7978 -5.9691 2.0537 28 1 6.3390 -5.9523 1.8976 29 1 5.1085 -6.0527 3.2031 30 1 6.5005 -7.9527 3.7190 31 1 6.7979 -8.3084 1.9905 32 1 2.9906 -8.0693 2.3917 33 1 3.7080 -8.9288 1.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385807419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:18 Heat of formation + Delta-G solvation = -125.642115 kcal Electronic energy + Delta-G solvation = -14295.818842 eV Core-core repulsion = 11741.194430 eV Total energy + Delta-G solvation = -2554.624412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56033 -38.87022 -36.62478 -35.14174 -32.43372 -30.50267 -28.86630 -27.56058 -24.73024 -23.59502 -22.86428 -22.15249 -19.18757 -18.02855 -17.52465 -17.33392 -16.68060 -16.11335 -15.72667 -15.45042 -15.23484 -14.94852 -14.28362 -14.06014 -13.91475 -13.61155 -12.96919 -12.85944 -12.59982 -12.47781 -12.31535 -11.95651 -11.89779 -11.71923 -10.85649 -10.83269 -10.59624 -10.32921 -9.37816 -8.83168 -6.53680 1.53069 1.62764 1.82930 2.50083 2.72565 3.03977 3.07307 3.19908 3.53828 3.84204 4.02025 4.15132 4.16155 4.19503 4.28664 4.42065 4.50726 4.55914 4.66273 4.72463 4.80643 4.84536 4.93816 5.01684 5.10788 5.69175 5.91856 5.93209 6.00036 6.31111 6.35116 6.70974 7.27248 8.58147 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.049667 B = 0.005073 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.624306 B = 5518.506951 C = 5932.512950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.029 4.029 3 Si 1.130 2.870 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.050 3.950 12 C 0.074 3.926 13 N -0.684 5.684 14 C 0.058 3.942 15 H 0.100 0.900 16 C -0.145 4.145 17 C 0.050 3.950 18 O -0.406 6.406 19 C 0.024 3.976 20 H 0.255 0.745 21 H -0.020 1.020 22 H -0.019 1.019 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.345 0.655 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -15.505 2.883 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.226 4.226 3 Si 0.949 3.051 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.070 0.930 9 C 0.119 3.881 10 O -0.310 6.310 11 C -0.027 4.027 12 C -0.055 4.055 13 N -0.316 5.316 14 C -0.053 4.053 15 H 0.118 0.882 16 C -0.184 4.184 17 C -0.026 4.026 18 O -0.325 6.325 19 C -0.054 4.054 20 H 0.065 0.935 21 H -0.002 1.002 22 H -0.001 1.001 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.499 -13.560 2.759 16.785 hybrid contribution -1.113 -2.416 0.013 2.660 sum 8.386 -15.976 2.772 18.255 Atomic orbital electron populations 1.70902 1.07733 1.29809 1.48171 1.27602 0.96458 1.06574 0.91964 0.82787 0.73981 0.70096 0.78187 1.19301 1.19521 1.19981 1.22288 0.95331 0.92142 1.56160 0.93024 1.19953 0.89347 0.86171 0.92609 1.87935 1.34212 1.13809 1.95015 1.22681 0.95785 0.84465 0.99764 1.21947 0.94860 0.95714 0.92967 1.60308 1.16883 1.49764 1.04628 1.23213 0.93103 0.88458 1.00526 0.88226 1.23234 0.98517 0.97560 0.99044 1.23538 0.88020 0.88026 1.03036 1.88358 1.27422 1.48999 1.67756 1.23981 0.91936 0.95614 0.93875 0.93539 1.00203 1.00128 0.94042 0.93068 0.90852 0.90587 0.83561 0.89018 0.90795 0.88391 0.90713 0.91411 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.65 21.45 0.29 -57.68 16 2 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 3 Si 1.13 51.00 29.90 68.60 2.05 53.05 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.62 -38.12 9.43 25.60 0.24 -37.88 16 8 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.19 11.03 5.00 71.24 0.36 11.39 16 10 O -0.39 -19.35 10.27 -148.98 -1.53 -20.88 16 11 C 0.05 1.80 6.22 71.98 0.45 2.25 16 12 C 0.07 2.00 5.93 86.30 0.51 2.52 16 13 N -0.68 -18.67 6.31 -485.08 -3.06 -21.73 16 14 C 0.06 1.25 3.29 46.18 0.15 1.40 16 15 H 0.10 2.03 7.91 -2.39 -0.02 2.01 16 16 C -0.15 -2.95 6.85 32.05 0.22 -2.73 16 17 C 0.05 0.88 7.78 72.65 0.57 1.45 16 18 O -0.41 -9.23 11.36 -148.98 -1.69 -10.92 16 19 C 0.02 0.49 7.46 72.45 0.54 1.03 16 20 H 0.26 16.06 7.22 -92.71 -0.67 15.39 16 21 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 22 H -0.02 -1.09 8.01 -2.38 -0.02 -1.11 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 26 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 27 H 0.34 9.00 8.16 -89.70 -0.73 8.27 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.34 7.57 -2.39 -0.02 1.32 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -70.63 278.14 0.00 -70.63 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.45 Total: 9.35 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 3.50 Total: -21.82 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.77 Total: -79.41 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -3.22 Total: -31.80 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -70.63 0.00 -70.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385807419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.017 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds