Wall clock time and date at job start Mon Mar 30 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.42399 * 2 1 4 4 O 1.44430 * 110.37367 * 237.68957 * 2 1 3 5 5 C 1.44416 * 105.27848 * 200.65923 * 4 2 1 6 6 C 1.54797 * 104.80651 * 40.58804 * 5 4 2 7 7 C 1.54486 * 110.37211 * 122.31352 * 2 1 3 8 8 H 1.09001 * 110.51001 * 24.02675 * 7 2 1 9 9 N 1.46498 * 110.50859 * 261.45160 * 7 2 1 10 10 C 1.36935 * 120.00145 * 303.62375 * 9 7 2 11 11 H 1.07999 * 120.00076 * 330.93466 * 10 9 7 12 12 C 1.38816 * 119.99865 * 150.93625 * 10 9 7 13 13 N 1.31622 * 119.99827 * 152.28258 * 12 10 9 14 14 Si 1.86802 * 119.99978 * 332.28064 * 12 10 9 15 15 H 1.48503 * 109.47079 * 95.33327 * 14 12 10 16 16 H 1.48504 * 109.47217 * 335.33183 * 14 12 10 17 17 H 1.48501 * 109.46829 * 215.33433 * 14 12 10 18 18 C 1.46501 * 119.99664 * 123.62509 * 9 7 2 19 19 C 1.53004 * 109.47103 * 84.15137 * 18 9 7 20 20 O 1.42897 * 109.47461 * 65.99897 * 19 18 9 21 21 H 1.09004 * 109.46777 * 302.26892 * 1 2 3 22 22 H 1.08996 * 109.47160 * 62.26503 * 1 2 3 23 23 H 1.08997 * 109.47713 * 182.26836 * 1 2 3 24 24 H 1.08996 * 110.37509 * 159.34385 * 5 4 2 25 25 H 1.09003 * 110.37466 * 281.57011 * 5 4 2 26 26 H 1.08996 * 110.56228 * 217.33950 * 6 5 4 27 27 H 1.09002 * 110.61666 * 94.52153 * 6 5 4 28 28 H 0.97001 * 119.99329 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.47229 * 204.14605 * 18 9 7 30 30 H 1.08999 * 109.47369 * 324.14845 * 18 9 7 31 31 H 1.08999 * 109.47042 * 186.00259 * 19 18 9 32 32 H 1.09002 * 109.46681 * 305.99984 * 19 18 9 33 33 H 0.96700 * 113.99998 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3872 -1.0872 -0.7996 6 6 3.3172 -1.5085 0.6883 7 6 2.0677 -0.7742 1.2240 8 1 1.3266 -1.4904 1.5787 9 7 2.4376 0.1534 2.2959 10 6 3.3439 1.1514 2.0554 11 1 4.1134 1.0139 1.3103 12 6 3.2734 2.3397 2.7695 13 7 4.3622 3.0506 2.9732 14 14 1.6333 2.9299 3.4412 15 1 1.4909 2.4935 4.8535 16 1 0.5302 2.3531 2.6313 17 1 1.5749 4.4122 3.3727 18 6 1.8379 0.0131 3.6252 19 6 2.6195 -1.0272 4.4301 20 8 3.9393 -0.5411 4.6824 21 1 -0.3633 0.5487 0.8690 22 1 -0.3633 0.4782 -0.9096 23 1 -0.3634 -1.0268 0.0407 24 1 3.7240 -1.9223 -1.4137 25 1 4.0528 -0.2330 -0.9240 26 1 4.2101 -1.1815 1.2212 27 1 3.1927 -2.5878 0.7761 28 1 4.3129 3.8812 3.4719 29 1 1.8713 0.9722 4.1419 30 1 0.8016 -0.3093 3.5241 31 1 2.1122 -1.2097 5.3774 32 1 2.6768 -1.9567 3.8636 33 1 4.4928 -1.1508 5.1893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388616488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:41 Heat of formation + Delta-G solvation = -62.854852 kcal Electronic energy + Delta-G solvation = -15819.260175 eV Core-core repulsion = 13267.358423 eV Total energy + Delta-G solvation = -2551.901752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98858 -36.55485 -34.67650 -31.74199 -30.87465 -30.40127 -27.83769 -25.32187 -23.25140 -21.49127 -21.28130 -19.57743 -16.78269 -16.51878 -15.69443 -15.37569 -14.93458 -14.61084 -13.87048 -13.46739 -13.08512 -12.76502 -12.51799 -12.28344 -11.91799 -11.73646 -11.22773 -11.10820 -10.89212 -10.53564 -10.46111 -10.36210 -9.99194 -9.74045 -9.54243 -9.13171 -9.00620 -8.38911 -6.90805 -5.90284 -3.19843 3.34430 3.50480 3.52417 4.48001 4.59985 4.94821 5.07857 5.31864 5.37782 5.58848 5.69762 5.85284 5.89513 5.93586 5.99219 6.02894 6.11301 6.21059 6.26858 6.32302 6.41413 6.57680 6.63504 6.70639 6.83120 6.91961 7.49109 8.05202 8.39909 8.47125 9.01938 9.81501 10.14324 11.25871 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.014237 C = 0.012405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.966643 B = 1966.289390 C = 2256.676846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.052 3.948 3 H 0.088 0.912 4 O -0.388 6.388 5 C 0.052 3.948 6 C -0.168 4.168 7 C 0.153 3.847 8 H 0.063 0.937 9 N -0.586 5.586 10 C -0.254 4.254 11 H 0.080 0.920 12 C 0.042 3.958 13 N -0.890 5.890 14 Si 0.863 3.137 15 H -0.288 1.288 16 H -0.271 1.271 17 H -0.304 1.304 18 C 0.129 3.871 19 C 0.062 3.938 20 O -0.536 6.536 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -8.992 -0.857 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 H 0.106 0.894 4 O -0.308 6.308 5 C -0.025 4.025 6 C -0.207 4.207 7 C 0.044 3.956 8 H 0.082 0.918 9 N -0.307 5.307 10 C -0.382 4.382 11 H 0.098 0.902 12 C -0.158 4.158 13 N -0.531 5.531 14 Si 0.694 3.306 15 H -0.217 1.217 16 H -0.196 1.196 17 H -0.232 1.232 18 C 0.003 3.997 19 C -0.019 4.019 20 O -0.337 6.337 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.360 -8.342 -1.353 10.007 hybrid contribution -0.548 -0.067 1.045 1.182 sum -5.907 -8.409 -0.308 10.282 Atomic orbital electron populations 1.21713 0.94592 1.01417 1.01753 1.23585 0.93981 0.97773 0.85306 0.89442 1.88978 1.27282 1.75122 1.39377 1.23275 0.84835 0.99026 0.95344 1.23381 1.02042 0.99153 0.96161 1.21701 0.93694 0.91255 0.88902 0.91835 1.44091 1.49657 1.33497 1.03442 1.18507 1.05282 0.91754 1.22673 0.90209 1.25134 0.96115 0.96687 0.97866 1.69947 1.26327 1.16186 1.40652 0.87200 0.88024 0.77108 0.78251 1.21653 1.19626 1.23191 1.21371 0.93374 0.98267 0.86674 1.22886 0.84954 0.97520 0.96540 1.86930 1.23801 1.45885 1.77068 0.91533 0.92794 0.92909 0.90684 0.92423 0.89152 0.92526 0.93000 0.91292 0.93202 0.95883 0.95011 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.53 37.16 0.35 -1.98 16 2 C 0.05 1.04 3.52 -25.95 -0.09 0.95 16 3 H 0.09 2.00 7.02 -51.93 -0.36 1.64 16 4 O -0.39 -7.56 11.34 -35.23 -0.40 -7.96 16 5 C 0.05 0.93 7.64 38.10 0.29 1.22 16 6 C -0.17 -3.08 6.43 -24.99 -0.16 -3.24 16 7 C 0.15 3.03 3.19 -66.36 -0.21 2.81 16 8 H 0.06 1.14 7.62 -51.93 -0.40 0.75 16 9 N -0.59 -13.47 2.18 -163.87 -0.36 -13.82 16 10 C -0.25 -6.92 7.91 -15.06 -0.12 -7.04 16 11 H 0.08 2.35 7.42 -52.49 -0.39 1.96 16 12 C 0.04 1.21 5.24 -17.43 -0.09 1.12 16 13 N -0.89 -27.36 13.97 55.49 0.78 -26.59 16 14 Si 0.86 22.07 25.05 -169.99 -4.26 17.81 16 15 H -0.29 -7.25 6.59 56.52 0.37 -6.88 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.30 -7.95 7.11 56.52 0.40 -7.54 16 18 C 0.13 2.77 4.73 -4.04 -0.02 2.75 16 19 C 0.06 1.15 7.38 37.16 0.27 1.43 16 20 O -0.54 -11.31 13.46 -35.23 -0.47 -11.78 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.88 7.15 -51.93 -0.37 1.51 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.07 1.68 2.85 -51.93 -0.15 1.53 16 30 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.35 5.43 9.12 45.56 0.42 5.85 16 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -31.78 265.02 -4.71 -36.49 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.22 Total: 3.84 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 0.23 Total: -1.98 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.42 Total: -40.41 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.87 Total: -19.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.26 Total: 17.81 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.78 -4.71 -36.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388616488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.369 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds