Wall clock time and date at job start Mon Mar 30 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.42399 * 2 1 4 4 O 1.44430 * 110.37367 * 237.68957 * 2 1 3 5 5 C 1.44416 * 105.27848 * 200.65923 * 4 2 1 6 6 C 1.54797 * 104.80651 * 40.58804 * 5 4 2 7 7 C 1.54486 * 110.37211 * 122.31352 * 2 1 3 8 8 H 1.09001 * 110.51001 * 24.02675 * 7 2 1 9 9 N 1.46498 * 110.50859 * 261.45160 * 7 2 1 10 10 C 1.36935 * 120.00145 * 303.62375 * 9 7 2 11 11 H 1.07999 * 120.00076 * 330.93466 * 10 9 7 12 12 C 1.38816 * 119.99865 * 150.93625 * 10 9 7 13 13 N 1.31622 * 119.99827 * 152.28258 * 12 10 9 14 14 Si 1.86802 * 119.99978 * 332.28064 * 12 10 9 15 15 H 1.48503 * 109.47079 * 95.33327 * 14 12 10 16 16 H 1.48504 * 109.47217 * 335.33183 * 14 12 10 17 17 H 1.48501 * 109.46829 * 215.33433 * 14 12 10 18 18 C 1.46501 * 119.99664 * 123.62509 * 9 7 2 19 19 C 1.53004 * 109.47103 * 84.15137 * 18 9 7 20 20 O 1.42897 * 109.47461 * 65.99897 * 19 18 9 21 21 H 1.09004 * 109.46777 * 302.26892 * 1 2 3 22 22 H 1.08996 * 109.47160 * 62.26503 * 1 2 3 23 23 H 1.08997 * 109.47713 * 182.26836 * 1 2 3 24 24 H 1.08996 * 110.37509 * 159.34385 * 5 4 2 25 25 H 1.09003 * 110.37466 * 281.57011 * 5 4 2 26 26 H 1.08996 * 110.56228 * 217.33950 * 6 5 4 27 27 H 1.09002 * 110.61666 * 94.52153 * 6 5 4 28 28 H 0.97001 * 119.99329 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.47229 * 204.14605 * 18 9 7 30 30 H 1.08999 * 109.47369 * 324.14845 * 18 9 7 31 31 H 1.08999 * 109.47042 * 186.00259 * 19 18 9 32 32 H 1.09002 * 109.46681 * 305.99984 * 19 18 9 33 33 H 0.96700 * 113.99998 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3872 -1.0872 -0.7996 6 6 3.3172 -1.5085 0.6883 7 6 2.0677 -0.7742 1.2240 8 1 1.3266 -1.4904 1.5787 9 7 2.4376 0.1534 2.2959 10 6 3.3439 1.1514 2.0554 11 1 4.1134 1.0139 1.3103 12 6 3.2734 2.3397 2.7695 13 7 4.3622 3.0506 2.9732 14 14 1.6333 2.9299 3.4412 15 1 1.4909 2.4935 4.8535 16 1 0.5302 2.3531 2.6313 17 1 1.5749 4.4122 3.3727 18 6 1.8379 0.0131 3.6252 19 6 2.6195 -1.0272 4.4301 20 8 3.9393 -0.5411 4.6824 21 1 -0.3633 0.5487 0.8690 22 1 -0.3633 0.4782 -0.9096 23 1 -0.3634 -1.0268 0.0407 24 1 3.7240 -1.9223 -1.4137 25 1 4.0528 -0.2330 -0.9240 26 1 4.2101 -1.1815 1.2212 27 1 3.1927 -2.5878 0.7761 28 1 4.3129 3.8812 3.4719 29 1 1.8713 0.9722 4.1419 30 1 0.8016 -0.3093 3.5241 31 1 2.1122 -1.2097 5.3774 32 1 2.6768 -1.9567 3.8636 33 1 4.4928 -1.1508 5.1893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388616488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:41 Heat of formation + Delta-G solvation = -88.346285 kcal Electronic energy + Delta-G solvation = -15820.365567 eV Core-core repulsion = 13267.358423 eV Total energy + Delta-G solvation = -2553.007143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55397 -38.15754 -36.38256 -33.76310 -32.33717 -31.99547 -29.55495 -26.98983 -24.99147 -23.10639 -22.79373 -21.29218 -18.48203 -18.30486 -17.40500 -17.16619 -16.41749 -16.17568 -15.57096 -15.13935 -14.70073 -14.42988 -14.35331 -13.96740 -13.37877 -13.23441 -12.94597 -12.78570 -12.59615 -12.19575 -12.05408 -11.93287 -11.76389 -11.51162 -11.34160 -10.66819 -10.60243 -10.45989 -8.81043 -8.08901 -5.33158 1.30689 1.42180 1.50720 2.49442 2.89812 3.19488 3.41190 3.71021 3.90081 4.05815 4.23476 4.37139 4.43054 4.48383 4.55778 4.58489 4.68211 4.74339 4.80347 4.85149 4.98125 5.08462 5.15359 5.23986 5.29165 5.37135 5.89802 6.04703 6.25124 7.02643 7.19763 7.75469 8.09926 9.11852 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.014237 C = 0.012405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.966643 B = 1966.289390 C = 2256.676846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 H 0.045 0.955 4 O -0.391 6.391 5 C 0.051 3.949 6 C -0.161 4.161 7 C 0.147 3.853 8 H 0.096 0.904 9 N -0.594 5.594 10 C -0.222 4.222 11 H 0.041 0.959 12 C -0.021 4.021 13 N -0.947 5.947 14 Si 0.927 3.073 15 H -0.281 1.281 16 H -0.252 1.252 17 H -0.319 1.319 18 C 0.115 3.885 19 C 0.064 3.936 20 O -0.577 6.577 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.255 0.745 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -11.488 -0.696 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.008 4.008 3 H 0.063 0.937 4 O -0.310 6.310 5 C -0.026 4.026 6 C -0.200 4.200 7 C 0.040 3.960 8 H 0.114 0.886 9 N -0.316 5.316 10 C -0.352 4.352 11 H 0.059 0.941 12 C -0.216 4.216 13 N -0.592 5.592 14 Si 0.758 3.242 15 H -0.209 1.209 16 H -0.176 1.176 17 H -0.248 1.248 18 C -0.010 4.010 19 C -0.016 4.016 20 O -0.382 6.382 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.129 0.871 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.655 -10.898 -1.189 13.371 hybrid contribution 0.223 0.588 0.924 1.118 sum -7.431 -10.310 -0.266 12.712 Atomic orbital electron populations 1.21673 0.91959 1.03126 1.02079 1.23514 0.96044 0.95616 0.85668 0.93719 1.88977 1.27796 1.74794 1.39430 1.23374 0.83935 0.99379 0.95920 1.23303 1.00001 1.00924 0.95779 1.21958 0.94966 0.91051 0.88027 0.88581 1.44143 1.49161 1.32925 1.05359 1.18302 1.04307 0.92519 1.20073 0.94140 1.25697 0.98812 0.97339 0.99754 1.70080 1.28444 1.16999 1.43659 0.86157 0.84377 0.75478 0.78228 1.20919 1.17629 1.24841 1.21593 0.95743 0.97963 0.85700 1.22856 0.83891 0.96855 0.98013 1.86860 1.25469 1.47956 1.77915 0.91786 0.92045 0.90364 0.87094 0.94784 0.92310 0.89146 0.93575 0.94231 0.89591 0.92541 0.93082 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.53 71.98 0.69 -3.33 16 2 C 0.05 1.93 3.52 31.10 0.11 2.04 16 3 H 0.04 2.08 7.02 -2.39 -0.02 2.06 16 4 O -0.39 -14.41 11.34 -148.98 -1.69 -16.10 16 5 C 0.05 1.72 7.64 72.60 0.55 2.28 16 6 C -0.16 -5.57 6.43 31.72 0.20 -5.37 16 7 C 0.15 5.43 3.19 46.01 0.15 5.58 16 8 H 0.10 2.97 7.62 -2.39 -0.02 2.95 16 9 N -0.59 -26.47 2.18 -672.37 -1.46 -27.94 16 10 C -0.22 -12.36 7.91 84.03 0.67 -11.70 16 11 H 0.04 2.53 7.42 -2.91 -0.02 2.51 16 12 C -0.02 -1.22 5.24 84.86 0.44 -0.78 16 13 N -0.95 -60.76 13.97 21.65 0.30 -60.46 16 14 Si 0.93 46.44 25.05 68.60 1.72 48.16 16 15 H -0.28 -13.60 6.59 99.48 0.66 -12.95 16 16 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.32 -16.55 7.11 99.48 0.71 -15.84 16 18 C 0.11 4.60 4.73 86.38 0.41 5.00 16 19 C 0.06 2.16 7.38 71.98 0.53 2.69 16 20 O -0.58 -23.57 13.46 -148.98 -2.00 -25.58 16 21 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 24 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 2.43 7.15 -2.39 -0.02 2.41 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.04 1.84 2.85 -2.39 -0.01 1.83 16 30 H 0.09 2.80 8.06 -2.39 -0.02 2.78 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.38 10.97 9.12 -74.06 -0.68 10.29 16 Total: -1.00 -70.87 265.02 0.98 -69.89 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.37 Total: 15.60 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 3.75 Total: -3.58 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -1.16 Total: -88.40 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -3.69 Total: -41.67 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.72 Total: 48.16 kcal Total: -70.87 0.98 -69.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388616488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.460 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds