Wall clock time and date at job start Mon Mar 30 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.41713 * 2 1 4 4 O 1.44418 * 110.37259 * 122.31082 * 2 1 3 5 5 C 1.44427 * 105.27667 * 159.34598 * 4 2 1 6 6 C 1.54479 * 104.80226 * 319.48561 * 5 4 2 7 7 C 1.54482 * 110.37481 * 237.69479 * 2 1 3 8 8 H 1.08997 * 110.51175 * 98.54007 * 7 2 1 9 9 N 1.46508 * 110.62378 * 335.88730 * 7 2 1 10 10 C 1.36930 * 120.00450 * 301.98680 * 9 7 2 11 11 H 1.08004 * 119.99611 * 330.52994 * 10 9 7 12 12 C 1.38807 * 120.00416 * 150.52966 * 10 9 7 13 13 N 1.31627 * 119.99754 * 332.59304 * 12 10 9 14 14 Si 1.86798 * 120.00503 * 152.59227 * 12 10 9 15 15 H 1.48500 * 109.47150 * 59.99930 * 14 12 10 16 16 H 1.48496 * 109.47715 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46906 * 300.00541 * 14 12 10 18 18 C 1.46502 * 119.99698 * 121.98493 * 9 7 2 19 19 C 1.53003 * 109.46987 * 84.63698 * 18 9 7 20 20 O 1.42905 * 109.46985 * 65.00247 * 19 18 9 21 21 H 1.09001 * 109.47048 * 182.30362 * 1 2 3 22 22 H 1.09000 * 109.47569 * 302.30591 * 1 2 3 23 23 H 1.09005 * 109.47355 * 62.31117 * 1 2 3 24 24 H 1.08998 * 110.37409 * 200.65813 * 5 4 2 25 25 H 1.09003 * 110.46913 * 78.36515 * 5 4 2 26 26 H 1.09000 * 110.51657 * 265.33584 * 6 5 4 27 27 H 1.09000 * 110.62961 * 142.67873 * 6 5 4 28 28 H 0.96999 * 119.99880 * 179.97438 * 13 12 10 29 29 H 1.09002 * 109.47135 * 204.63818 * 18 9 7 30 30 H 1.09003 * 109.47354 * 324.64029 * 18 9 7 31 31 H 1.08996 * 109.47067 * 184.99727 * 19 18 9 32 32 H 1.08998 * 109.47251 * 305.00161 * 19 18 9 33 33 H 0.96695 * 114.00051 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0327 -0.7236 1.1442 5 6 3.3873 -1.0871 0.7995 6 6 3.3178 -1.5056 -0.6859 7 6 2.0678 -0.7739 -1.2240 8 1 2.3429 -0.0838 -2.0215 9 7 1.0742 -1.7388 -1.7018 10 6 0.6010 -2.7087 -0.8589 11 1 1.2278 -3.0866 -0.0647 12 6 -0.6841 -3.2061 -1.0251 13 7 -1.6157 -2.4533 -1.5710 14 14 -1.0917 -4.9439 -0.4743 15 1 -0.8434 -5.0719 0.9842 16 1 -2.5200 -5.2320 -0.7609 17 1 -0.2353 -5.9096 -1.2088 18 6 0.5869 -1.6659 -3.0815 19 6 1.5524 -2.4134 -4.0035 20 8 1.5461 -3.8038 -3.6733 21 1 -0.3633 -1.0268 0.0413 22 1 -0.3634 0.5492 0.8686 23 1 -0.3634 0.4775 -0.9100 24 1 3.7241 -1.9222 1.4136 25 1 4.0540 -0.2335 0.9224 26 1 3.1955 -2.5852 -0.7733 27 1 4.2106 -1.1790 -1.2192 28 1 -2.5137 -2.8010 -1.6875 29 1 -0.4009 -2.1228 -3.1425 30 1 0.5243 -0.6224 -3.3901 31 1 1.2386 -2.2846 -5.0393 32 1 2.5586 -2.0143 -3.8763 33 1 2.1373 -4.3403 -4.2189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388616490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:46 Heat of formation + Delta-G solvation = -61.937502 kcal Electronic energy + Delta-G solvation = -16027.057268 eV Core-core repulsion = 13475.195295 eV Total energy + Delta-G solvation = -2551.861972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.85427 -36.28077 -34.50279 -31.53401 -30.37165 -29.89887 -27.41131 -25.15858 -23.26659 -21.14805 -20.84099 -19.22695 -16.59459 -16.53061 -15.42373 -14.96150 -14.52938 -14.39489 -13.95048 -13.40000 -12.79473 -12.62254 -12.26107 -11.57561 -11.21631 -11.10970 -10.82956 -10.76493 -10.53783 -10.29104 -10.23180 -10.10426 -9.83528 -9.71012 -9.54480 -9.08857 -8.82048 -8.13052 -6.55479 -5.66247 -3.07379 3.54165 3.57687 3.65105 4.64609 4.79104 5.22746 5.33141 5.45017 5.64510 5.74961 5.80724 5.99265 6.06195 6.11253 6.27747 6.36756 6.37173 6.49802 6.59781 6.78064 6.80189 6.96853 7.01802 7.11488 7.73088 7.75498 8.00910 8.16782 8.47277 8.65314 9.32356 9.96743 10.46851 11.36016 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.015426 C = 0.012625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.550160 B = 1814.664638 C = 2217.203179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.063 3.937 3 H 0.037 0.963 4 O -0.367 6.367 5 C 0.049 3.951 6 C -0.168 4.168 7 C 0.145 3.855 8 H 0.058 0.942 9 N -0.563 5.563 10 C -0.220 4.220 11 H 0.064 0.936 12 C 0.009 3.991 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.286 1.286 16 H -0.296 1.296 17 H -0.284 1.284 18 C 0.136 3.864 19 C 0.060 3.940 20 O -0.543 6.543 21 H 0.127 0.873 22 H 0.021 0.979 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.252 0.748 29 H 0.113 0.887 30 H 0.034 0.966 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 2.886 -2.494 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 H 0.055 0.945 4 O -0.286 6.286 5 C -0.028 4.028 6 C -0.208 4.208 7 C 0.035 3.965 8 H 0.076 0.924 9 N -0.281 5.281 10 C -0.350 4.350 11 H 0.082 0.918 12 C -0.189 4.189 13 N -0.536 5.536 14 Si 0.724 3.276 15 H -0.213 1.213 16 H -0.222 1.222 17 H -0.211 1.211 18 C 0.010 3.990 19 C -0.020 4.020 20 O -0.344 6.344 21 H 0.145 0.855 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.711 3.025 -1.869 7.595 hybrid contribution 0.512 -0.919 -0.489 1.160 sum 7.224 2.106 -2.357 7.885 Atomic orbital electron populations 1.21800 0.91757 1.07619 0.98255 1.23466 0.97146 0.92549 0.86485 0.94482 1.89125 1.25934 1.74780 1.38779 1.23157 0.85595 0.98108 0.95976 1.23396 0.98548 1.03471 0.95365 1.21758 0.89744 0.90700 0.94250 0.92367 1.43801 1.45911 1.31413 1.06990 1.18740 0.94808 1.10559 1.10847 0.91809 1.24743 0.94931 0.98418 1.00775 1.70016 1.01303 1.34091 1.48231 0.86499 0.76422 0.86643 0.78050 1.21290 1.22188 1.21086 1.21147 0.99958 0.95357 0.82578 1.23068 0.99205 0.82858 0.96856 1.86868 1.67159 1.18614 1.61717 0.85454 0.96030 0.92977 0.90574 0.94165 0.89619 0.92710 0.93840 0.86954 0.94735 0.96312 0.96185 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.90 37.15 0.33 -2.84 16 2 C 0.06 1.33 3.62 -25.96 -0.09 1.23 16 3 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 4 O -0.37 -8.08 11.20 -35.23 -0.39 -8.47 16 5 C 0.05 0.88 7.63 37.93 0.29 1.17 16 6 C -0.17 -3.14 6.39 -25.16 -0.16 -3.30 16 7 C 0.14 2.99 3.50 -66.35 -0.23 2.76 16 8 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 9 N -0.56 -13.31 1.65 -163.87 -0.27 -13.58 16 10 C -0.22 -5.86 5.96 -15.06 -0.09 -5.95 16 11 H 0.06 1.79 7.21 -52.48 -0.38 1.42 16 12 C 0.01 0.26 4.31 -17.43 -0.08 0.18 16 13 N -0.89 -24.90 10.81 55.49 0.60 -24.30 16 14 Si 0.89 22.56 29.63 -169.99 -5.04 17.52 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 17 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 18 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 19 C 0.06 1.18 7.39 37.16 0.27 1.46 16 20 O -0.54 -11.41 13.39 -35.23 -0.47 -11.89 16 21 H 0.13 3.42 4.25 -51.93 -0.22 3.20 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.80 7.02 -51.93 -0.36 1.44 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.11 2.96 5.23 -51.93 -0.27 2.69 16 30 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.35 5.38 9.12 45.56 0.42 5.80 16 LS Contribution 263.59 15.07 3.97 3.97 Total: -1.00 -29.64 263.59 -5.55 -35.19 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.17 Total: 3.76 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.22 Total: -2.21 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.33 Total: -37.88 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.87 Total: -20.36 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.04 Total: 17.52 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.64 -5.55 -35.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388616490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.744 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds