Wall clock time and date at job start Mon Mar 30 2020 03:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99710 * 2 1 4 4 C 1.53007 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47082 * 184.99788 * 4 3 2 6 6 C 1.52997 * 109.47260 * 305.00655 * 4 3 2 7 7 N 1.46909 * 109.46686 * 65.00433 * 4 3 2 8 8 C 1.47479 * 110.99742 * 165.12967 * 7 4 3 9 9 C 1.53507 * 87.93045 * 221.29374 * 8 7 4 10 10 O 1.42899 * 114.17439 * 272.37931 * 9 8 7 11 11 C 1.50702 * 114.17000 * 139.66961 * 9 8 7 12 12 H 1.08000 * 120.00249 * 266.16392 * 11 9 8 13 13 C 1.37875 * 119.99775 * 86.15909 * 11 9 8 14 14 N 1.31515 * 120.00333 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00000 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47073 * 90.00541 * 15 13 11 17 17 H 1.48508 * 109.47113 * 210.00110 * 15 13 11 18 18 H 1.48498 * 109.47267 * 329.99909 * 15 13 11 19 19 C 1.47479 * 111.00026 * 69.15592 * 7 4 3 20 20 H 1.09006 * 109.47120 * 59.99782 * 1 2 3 21 21 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47753 * 300.00136 * 1 2 3 23 23 H 1.09001 * 109.47682 * 299.99632 * 3 2 1 24 24 H 1.09001 * 109.46862 * 60.00312 * 3 2 1 25 25 H 1.09001 * 109.46970 * 185.53521 * 6 4 3 26 26 H 1.09003 * 109.47032 * 305.53024 * 6 4 3 27 27 H 1.08995 * 109.47186 * 65.52975 * 6 4 3 28 28 H 1.08995 * 113.47893 * 336.06438 * 8 7 4 29 29 H 1.09002 * 113.47525 * 106.52552 * 8 7 4 30 30 H 0.96698 * 113.99912 * 273.84344 * 10 9 8 31 31 H 0.96999 * 120.00508 * 180.02562 * 14 13 11 32 32 H 1.08992 * 113.47741 * 253.47202 * 19 7 4 33 33 H 1.09006 * 113.47611 * 23.94180 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9783 2.1767 0.0902 6 6 3.9780 0.3198 1.1825 7 7 3.9778 0.5625 -1.2544 8 6 5.4276 0.7457 -1.4528 9 6 5.1331 1.0277 -2.9327 10 8 5.0919 -0.1408 -3.7542 11 6 5.9539 2.1452 -3.5232 12 1 5.5619 3.1514 -3.5420 13 6 7.2052 1.8831 -4.0392 14 7 7.6824 0.6578 -4.0167 15 14 8.2229 3.2684 -4.7705 16 1 9.0618 3.8801 -3.7087 17 1 9.0975 2.7278 -5.8421 18 1 7.3188 4.2984 -5.3421 19 6 3.7633 1.4687 -2.3980 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3635 0.5138 0.8900 23 1 1.6885 1.8465 -0.8900 24 1 1.6884 1.8463 0.8900 25 1 5.0665 0.3143 1.2411 26 1 3.5666 0.7280 2.1057 27 1 3.6164 -0.6988 1.0428 28 1 5.8337 1.6051 -0.9194 29 1 6.0064 -0.1636 -1.2908 30 1 5.9559 -0.4164 -4.0897 31 1 8.5630 0.4734 -4.3794 32 1 2.9317 1.1721 -3.0370 33 1 3.7253 2.5212 -2.1169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388648772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:16 Heat of formation + Delta-G solvation = -81.830028 kcal Electronic energy + Delta-G solvation = -15211.077719 eV Core-core repulsion = 12658.353142 eV Total energy + Delta-G solvation = -2552.724577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15635 -38.69403 -36.43290 -34.11886 -33.45922 -28.85560 -28.48046 -26.97829 -26.00971 -25.45246 -21.47137 -20.49931 -19.16253 -17.52002 -17.13032 -17.04290 -16.38467 -16.31778 -15.68473 -15.14864 -14.87584 -14.40804 -13.95429 -13.56369 -13.38737 -13.19500 -12.96562 -12.78539 -12.66425 -12.26652 -12.19996 -12.14437 -11.92264 -11.56515 -11.04826 -10.62438 -10.54129 -10.03500 -9.58691 -8.24689 -6.43095 1.42630 1.44668 1.55251 2.37492 2.92902 2.95772 3.25257 3.86359 3.99479 4.00212 4.28830 4.35551 4.42777 4.47385 4.53743 4.59813 4.60445 4.75249 4.84863 4.87399 4.97852 5.00815 5.15789 5.33570 5.41016 5.55470 5.75604 5.97182 6.28450 6.47796 6.63249 7.30182 7.57104 8.80679 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.052733 B = 0.007447 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.845514 B = 3758.914805 C = 3803.827319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.077 3.923 4 C 0.034 3.966 5 H 0.062 0.938 6 C -0.125 4.125 7 N -0.463 5.463 8 C -0.008 4.008 9 C 0.218 3.782 10 O -0.584 6.584 11 C -0.557 4.557 12 H 0.067 0.933 13 C 0.025 3.975 14 N -0.921 5.921 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.016 3.984 20 H 0.039 0.961 21 H 0.091 0.909 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.383 0.617 31 H 0.275 0.725 32 H 0.062 0.938 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 3.234 8.194 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.000 4.000 4 C -0.075 4.075 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.187 5.187 8 C -0.137 4.137 9 C 0.177 3.823 10 O -0.396 6.396 11 C -0.595 4.595 12 H 0.086 0.914 13 C -0.175 4.175 14 N -0.563 5.563 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.113 4.113 20 H 0.058 0.942 21 H 0.110 0.890 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.238 0.762 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.052 2.317 8.330 12.518 hybrid contribution 1.402 1.378 -0.516 2.032 sum -7.649 3.695 7.815 11.543 Atomic orbital electron populations 1.22887 0.80221 1.03453 1.00503 1.87972 1.20700 1.27963 1.95403 1.22528 0.91986 0.84912 1.00593 1.22478 0.94898 0.97408 0.92693 0.91996 1.21539 1.00218 1.00183 0.96292 1.69010 1.07774 1.40117 1.01772 1.24394 0.89858 0.98651 1.00813 1.19758 0.91947 0.84050 0.86593 1.86021 1.37586 1.46638 1.69367 1.21852 1.01580 0.95085 1.41000 0.91449 1.25867 0.98321 0.98452 0.94825 1.69384 1.19442 1.20829 1.46598 0.85355 0.78151 0.78774 0.78123 1.19719 1.20581 1.19248 1.23913 0.98484 0.95587 0.93348 0.94203 0.89008 0.92531 0.93884 0.90553 0.93736 0.90169 0.92861 0.92135 0.93543 0.76246 0.91557 0.91947 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -12.72 9.88 -148.98 -1.47 -14.19 16 3 C 0.08 2.22 5.56 71.98 0.40 2.62 16 4 C 0.03 1.16 2.06 44.92 0.09 1.26 16 5 H 0.06 2.01 7.56 -2.39 -0.02 1.99 16 6 C -0.12 -3.85 8.95 71.98 0.64 -3.20 16 7 N -0.46 -20.13 6.08 -902.76 -5.49 -25.62 16 8 C -0.01 -0.36 6.55 83.58 0.55 0.19 16 9 C 0.22 11.45 1.57 -11.20 -0.02 11.43 16 10 O -0.58 -33.58 13.54 -148.98 -2.02 -35.60 16 11 C -0.56 -30.12 8.68 25.60 0.22 -29.90 16 12 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 13 C 0.02 1.31 5.40 84.65 0.46 1.77 16 14 N -0.92 -50.56 11.02 21.45 0.24 -50.33 16 15 Si 0.97 41.60 29.54 68.60 2.03 43.62 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 C 0.02 0.70 6.11 83.58 0.51 1.21 16 20 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 21 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.04 1.27 7.36 -2.39 -0.02 1.25 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.81 7.75 -2.39 -0.02 1.79 16 28 H 0.06 2.80 7.64 -2.39 -0.02 2.78 16 29 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.38 22.39 6.33 -74.06 -0.47 21.92 16 31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.08 3.14 7.74 -2.38 -0.02 3.12 16 Total: -1.00 -61.53 272.60 -1.99 -63.53 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.61 Total: 31.39 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.10 Total: -12.80 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -5.25 Total: -75.95 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -3.49 Total: -49.79 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -61.53 -1.99 -63.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388648772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.305 kcal (2) G-P(sol) polarization free energy of solvation -61.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds