Wall clock time and date at job start Mon Mar 30 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42899 * 113.99956 * 2 1 4 4 C 1.52995 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47186 * 175.00022 * 4 3 2 6 6 C 1.53003 * 109.47583 * 54.99940 * 4 3 2 7 7 N 1.46909 * 109.47102 * 294.99827 * 4 3 2 8 8 C 1.47484 * 110.99867 * 195.93084 * 7 4 3 9 9 C 1.53508 * 87.93192 * 138.70345 * 8 7 4 10 10 O 1.42900 * 114.17040 * 87.61864 * 9 8 7 11 11 C 1.50695 * 114.17177 * 220.32658 * 9 8 7 12 12 H 1.08004 * 119.99939 * 93.83787 * 11 9 8 13 13 C 1.37880 * 120.00107 * 273.84252 * 11 9 8 14 14 N 1.31516 * 119.99609 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99986 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46860 * 90.00332 * 15 13 11 17 17 H 1.48505 * 109.46738 * 209.99688 * 15 13 11 18 18 H 1.48493 * 109.47080 * 329.99640 * 15 13 11 19 19 C 1.47474 * 110.99942 * 291.90035 * 7 4 3 20 20 H 1.08997 * 109.46776 * 300.00398 * 1 2 3 21 21 H 1.09002 * 109.47107 * 59.99583 * 1 2 3 22 22 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47115 * 300.00161 * 3 2 1 24 24 H 1.08995 * 109.47128 * 59.99782 * 3 2 1 25 25 H 1.09006 * 109.46784 * 304.63066 * 6 4 3 26 26 H 1.08999 * 109.47000 * 64.62245 * 6 4 3 27 27 H 1.08993 * 109.47184 * 184.62998 * 6 4 3 28 28 H 1.09004 * 113.47052 * 253.47304 * 8 7 4 29 29 H 1.09001 * 113.47455 * 23.93283 * 8 7 4 30 30 H 0.96702 * 114.00114 * 86.15740 * 10 9 8 31 31 H 0.97003 * 119.99485 * 180.02562 * 14 13 11 32 32 H 1.09006 * 113.48064 * 336.06223 * 19 7 4 33 33 H 1.09002 * 113.47971 * 106.52672 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 6 3.9782 0.3197 -1.1826 7 7 3.9779 0.5622 1.2544 8 6 5.4232 0.7671 1.4651 9 6 5.1128 1.0360 2.9443 10 8 5.0836 -0.1377 3.7588 11 6 5.9113 2.1629 3.5473 12 1 5.5034 3.1627 3.5687 13 6 7.1626 1.9175 4.0717 14 7 7.6591 0.6999 4.0460 15 14 8.1527 3.3144 4.8186 16 1 7.8402 3.4237 6.2662 17 1 9.6021 3.0422 4.6443 18 1 7.8029 4.5875 4.1390 19 6 3.7405 1.4584 2.4012 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6887 1.8463 -0.8899 24 1 1.6887 1.8464 0.8899 25 1 3.4709 -0.6441 -1.1376 26 1 3.7225 0.8215 -2.1158 27 1 5.0561 0.1655 -1.1363 28 1 6.0174 -0.1322 1.3026 29 1 5.8197 1.6358 0.9396 30 1 5.9493 -0.4016 4.0996 31 1 8.5393 0.5272 4.4153 32 1 3.6880 2.5118 2.1256 33 1 2.9086 1.1453 3.0321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388648773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:18 Heat of formation + Delta-G solvation = -58.214214 kcal Electronic energy + Delta-G solvation = -15212.569699 eV Core-core repulsion = 12660.869180 eV Total energy + Delta-G solvation = -2551.700518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42676 -37.40649 -34.57467 -32.12695 -31.79351 -27.29487 -26.92237 -25.68914 -24.29367 -23.72806 -19.93777 -18.60828 -17.19902 -16.20798 -15.71875 -15.20231 -14.93659 -14.72292 -13.98229 -13.53742 -13.25091 -12.86605 -12.34630 -11.92267 -11.82701 -11.56764 -11.38912 -11.24174 -11.00764 -10.74691 -10.51183 -10.48256 -10.15694 -9.89838 -9.40330 -9.17311 -8.60576 -8.07516 -7.79364 -6.24316 -4.34184 3.20712 3.27931 3.30508 4.05400 4.26526 4.84199 5.01496 5.19237 5.30744 5.43941 5.49679 5.60129 5.72805 5.78046 5.87981 5.97428 6.10973 6.23063 6.28102 6.41112 6.49736 6.72540 6.77192 7.11061 7.26269 7.39323 7.43493 7.79516 8.00888 8.13356 8.67940 9.35815 9.74434 10.81564 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.052470 B = 0.007454 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.507133 B = 3755.278316 C = 3797.028945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.074 3.926 4 C 0.042 3.958 5 H 0.053 0.947 6 C -0.133 4.133 7 N -0.454 5.454 8 C -0.021 4.021 9 C 0.248 3.752 10 O -0.569 6.569 11 C -0.534 4.534 12 H 0.065 0.935 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.003 3.997 20 H 0.037 0.963 21 H 0.033 0.967 22 H 0.082 0.918 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.389 0.611 31 H 0.271 0.729 32 H 0.060 0.940 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 1.848 -7.298 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.003 4.003 4 C -0.067 4.067 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.177 5.177 8 C -0.150 4.150 9 C 0.206 3.794 10 O -0.381 6.381 11 C -0.572 4.572 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.126 4.126 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.371 0.921 -7.440 11.238 hybrid contribution 1.238 1.860 0.300 2.254 sum -7.134 2.781 -7.141 10.469 Atomic orbital electron populations 1.22689 0.82366 1.02285 0.99268 1.88021 1.18255 1.27344 1.95128 1.22525 0.93800 0.84825 0.99198 1.22297 0.92938 0.97060 0.94396 0.92893 1.21602 1.01281 1.00791 0.95384 1.69082 1.09078 1.39747 0.99817 1.24666 0.88763 0.99561 1.02020 1.19345 0.89532 0.84570 0.85967 1.86042 1.38008 1.45140 1.68933 1.21594 1.01077 0.94968 1.39610 0.91643 1.25070 0.97227 0.96173 0.94689 1.69307 1.18705 1.19818 1.46026 0.86401 0.78938 0.81915 0.79619 1.20315 1.20952 1.19772 1.24038 1.00690 0.94652 0.93251 0.94455 0.94855 0.89987 0.93896 0.93458 0.91246 0.93455 0.92751 0.91357 0.92563 0.75529 0.91842 0.92218 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.21 9.69 -35.23 -0.34 -6.55 16 3 C 0.07 1.16 5.55 37.16 0.21 1.37 16 4 C 0.04 0.76 2.06 -67.71 -0.14 0.62 16 5 H 0.05 0.93 7.56 -51.93 -0.39 0.53 16 6 C -0.13 -2.17 9.25 37.16 0.34 -1.83 16 7 N -0.45 -9.98 6.08 -236.58 -1.44 -11.41 16 8 C -0.02 -0.50 6.45 -7.55 -0.05 -0.55 16 9 C 0.25 6.46 1.57 -91.24 -0.14 6.31 16 10 O -0.57 -15.96 13.54 -35.23 -0.48 -16.44 16 11 C -0.53 -14.44 8.68 -34.44 -0.30 -14.74 16 12 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 14 N -0.90 -24.41 11.02 55.43 0.61 -23.80 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 19 C 0.00 0.06 6.05 -7.55 -0.05 0.01 16 20 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 21 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.75 7.32 -51.93 -0.38 0.37 16 25 H 0.07 1.20 7.41 -51.93 -0.38 0.81 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.91 7.63 -51.93 -0.40 0.51 16 28 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 29 H 0.06 1.30 7.63 -51.93 -0.40 0.91 16 30 H 0.39 11.02 6.33 45.56 0.29 11.30 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.06 1.26 7.76 -51.93 -0.40 0.86 16 33 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -29.01 271.95 -6.25 -35.25 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.57 Total: 8.93 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 0.89 Total: -5.53 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.83 Total: -35.21 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.82 Total: -22.99 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.01 -6.25 -35.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388648773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.961 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds