Wall clock time and date at job start Mon Mar 30 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42899 * 113.99956 * 2 1 4 4 C 1.52995 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47186 * 175.00022 * 4 3 2 6 6 C 1.53003 * 109.47583 * 54.99940 * 4 3 2 7 7 N 1.46909 * 109.47102 * 294.99827 * 4 3 2 8 8 C 1.47484 * 110.99867 * 195.93084 * 7 4 3 9 9 C 1.53508 * 87.93192 * 138.70345 * 8 7 4 10 10 O 1.42900 * 114.17040 * 87.61864 * 9 8 7 11 11 C 1.50695 * 114.17177 * 220.32658 * 9 8 7 12 12 H 1.08004 * 119.99939 * 93.83787 * 11 9 8 13 13 C 1.37880 * 120.00107 * 273.84252 * 11 9 8 14 14 N 1.31516 * 119.99609 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99986 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46860 * 90.00332 * 15 13 11 17 17 H 1.48505 * 109.46738 * 209.99688 * 15 13 11 18 18 H 1.48493 * 109.47080 * 329.99640 * 15 13 11 19 19 C 1.47474 * 110.99942 * 291.90035 * 7 4 3 20 20 H 1.08997 * 109.46776 * 300.00398 * 1 2 3 21 21 H 1.09002 * 109.47107 * 59.99583 * 1 2 3 22 22 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47115 * 300.00161 * 3 2 1 24 24 H 1.08995 * 109.47128 * 59.99782 * 3 2 1 25 25 H 1.09006 * 109.46784 * 304.63066 * 6 4 3 26 26 H 1.08999 * 109.47000 * 64.62245 * 6 4 3 27 27 H 1.08993 * 109.47184 * 184.62998 * 6 4 3 28 28 H 1.09004 * 113.47052 * 253.47304 * 8 7 4 29 29 H 1.09001 * 113.47455 * 23.93283 * 8 7 4 30 30 H 0.96702 * 114.00114 * 86.15740 * 10 9 8 31 31 H 0.97003 * 119.99485 * 180.02562 * 14 13 11 32 32 H 1.09006 * 113.48064 * 336.06223 * 19 7 4 33 33 H 1.09002 * 113.47971 * 106.52672 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 6 3.9782 0.3197 -1.1826 7 7 3.9779 0.5622 1.2544 8 6 5.4232 0.7671 1.4651 9 6 5.1128 1.0360 2.9443 10 8 5.0836 -0.1377 3.7588 11 6 5.9113 2.1629 3.5473 12 1 5.5034 3.1627 3.5687 13 6 7.1626 1.9175 4.0717 14 7 7.6591 0.6999 4.0460 15 14 8.1527 3.3144 4.8186 16 1 7.8402 3.4237 6.2662 17 1 9.6021 3.0422 4.6443 18 1 7.8029 4.5875 4.1390 19 6 3.7405 1.4584 2.4012 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6887 1.8463 -0.8899 24 1 1.6887 1.8464 0.8899 25 1 3.4709 -0.6441 -1.1376 26 1 3.7225 0.8215 -2.1158 27 1 5.0561 0.1655 -1.1363 28 1 6.0174 -0.1322 1.3026 29 1 5.8197 1.6358 0.9396 30 1 5.9493 -0.4016 4.0996 31 1 8.5393 0.5272 4.4153 32 1 3.6880 2.5118 2.1256 33 1 2.9086 1.1453 3.0321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388648773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:18 Heat of formation + Delta-G solvation = -81.819201 kcal Electronic energy + Delta-G solvation = -15213.593288 eV Core-core repulsion = 12660.869180 eV Total energy + Delta-G solvation = -2552.724108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16029 -38.69670 -36.43145 -34.11860 -33.45474 -28.85575 -28.48623 -26.98265 -26.01147 -25.45016 -21.46948 -20.49667 -19.16261 -17.52151 -17.13064 -17.05404 -16.38810 -16.31437 -15.68663 -15.16314 -14.86092 -14.40292 -13.95423 -13.54356 -13.38584 -13.19549 -12.98117 -12.77729 -12.68135 -12.24961 -12.20516 -12.15283 -11.91774 -11.56965 -11.05338 -10.61452 -10.54132 -10.03862 -9.58348 -8.24781 -6.43138 1.43053 1.44591 1.54950 2.37519 2.92610 2.95679 3.25214 3.86794 3.99215 4.00001 4.29018 4.35686 4.42999 4.46542 4.53708 4.59942 4.60212 4.75632 4.84894 4.87280 4.97987 5.00619 5.15565 5.35356 5.41010 5.55485 5.75609 5.97145 6.28168 6.47561 6.63212 7.30103 7.57100 8.80610 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.052470 B = 0.007454 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.507133 B = 3755.278316 C = 3797.028945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.076 3.924 4 C 0.034 3.966 5 H 0.062 0.938 6 C -0.126 4.126 7 N -0.464 5.464 8 C -0.008 4.008 9 C 0.218 3.782 10 O -0.584 6.584 11 C -0.557 4.557 12 H 0.067 0.933 13 C 0.025 3.975 14 N -0.921 5.921 15 Si 0.972 3.028 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.016 3.984 20 H 0.039 0.961 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.383 0.617 31 H 0.275 0.725 32 H 0.077 0.923 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 3.205 -8.218 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.000 4.000 4 C -0.075 4.075 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.187 5.187 8 C -0.137 4.137 9 C 0.177 3.823 10 O -0.396 6.396 11 C -0.595 4.595 12 H 0.086 0.914 13 C -0.175 4.175 14 N -0.562 5.562 15 Si 0.796 3.204 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.113 4.113 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.238 0.762 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.039 2.279 -8.374 12.531 hybrid contribution 1.376 1.393 0.553 2.034 sum -7.663 3.672 -7.821 11.549 Atomic orbital electron populations 1.22888 0.80196 1.03462 1.00513 1.87969 1.20717 1.27962 1.95403 1.22508 0.92013 0.84912 1.00610 1.22477 0.94888 0.97388 0.92711 0.92047 1.21553 1.00278 1.00296 0.96238 1.68998 1.07429 1.40605 1.01664 1.24403 0.89993 0.98563 1.00774 1.19756 0.91952 0.83975 0.86663 1.86022 1.37721 1.46287 1.69596 1.21853 1.01811 0.95304 1.40545 0.91438 1.25871 0.98134 0.98564 0.94908 1.69389 1.19066 1.21453 1.46341 0.85352 0.77368 0.79037 0.78634 1.20059 1.20500 1.18989 1.23905 0.98484 0.95648 0.93260 0.94193 0.92526 0.88995 0.90560 0.93855 0.92493 0.90189 0.93921 0.93540 0.92120 0.76246 0.91562 0.90504 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -12.72 9.69 -148.98 -1.44 -14.16 16 3 C 0.08 2.22 5.55 71.98 0.40 2.62 16 4 C 0.03 1.17 2.06 44.91 0.09 1.26 16 5 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 6 C -0.13 -3.89 9.25 71.98 0.67 -3.22 16 7 N -0.46 -20.16 6.08 -902.80 -5.49 -25.64 16 8 C -0.01 -0.37 6.45 83.57 0.54 0.17 16 9 C 0.22 11.46 1.57 -11.20 -0.02 11.44 16 10 O -0.58 -33.60 13.54 -148.98 -2.02 -35.62 16 11 C -0.56 -30.12 8.68 25.60 0.22 -29.89 16 12 H 0.07 3.52 7.81 -2.91 -0.02 3.49 16 13 C 0.02 1.31 5.40 84.66 0.46 1.77 16 14 N -0.92 -50.57 11.02 21.45 0.24 -50.34 16 15 Si 0.97 41.60 29.54 68.60 2.03 43.62 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 C 0.02 0.71 6.05 83.57 0.51 1.22 16 20 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.28 7.32 -2.39 -0.02 1.26 16 25 H 0.06 1.89 7.41 -2.38 -0.02 1.87 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.38 7.63 -2.39 -0.02 1.37 16 28 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.06 2.80 7.63 -2.39 -0.02 2.79 16 30 H 0.38 22.39 6.33 -74.06 -0.47 21.92 16 31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.08 3.14 7.76 -2.38 -0.02 3.12 16 33 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -61.55 271.95 -1.96 -63.50 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.61 Total: 31.46 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.11 Total: -12.83 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -5.25 Total: -75.98 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -3.46 Total: -49.78 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -61.55 -1.96 -63.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388648773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.316 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds