Wall clock time and date at job start Mon Mar 30 2020 03:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47095 * 2 1 4 4 C 1.50699 * 109.47304 * 240.00034 * 2 1 3 5 5 H 1.07998 * 119.99962 * 335.24773 * 4 2 1 6 6 C 1.37874 * 120.00203 * 155.24278 * 4 2 1 7 7 N 1.31516 * 120.00032 * 355.16200 * 6 4 2 8 8 Si 1.86807 * 120.00086 * 175.16626 * 6 4 2 9 9 H 1.48497 * 109.47373 * 59.99896 * 8 6 4 10 10 H 1.48499 * 109.47255 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46913 * 299.99901 * 8 6 4 12 12 N 1.46898 * 109.47583 * 120.00036 * 2 1 3 13 13 C 1.46898 * 111.00010 * 275.00385 * 12 2 1 14 14 C 1.52998 * 109.47244 * 179.97438 * 13 12 2 15 15 C 1.53004 * 113.00039 * 50.33217 * 14 13 12 16 16 O 1.42897 * 109.47381 * 180.02562 * 15 14 13 17 17 C 1.54035 * 113.81965 * 278.50891 * 14 13 12 18 18 O 1.44453 * 85.42389 * 223.23581 * 17 14 13 19 19 C 1.44170 * 93.37778 * 24.08605 * 18 17 14 20 20 H 1.09000 * 109.47508 * 295.05132 * 1 2 3 21 21 H 1.09001 * 109.47216 * 55.04827 * 1 2 3 22 22 H 1.08997 * 109.47342 * 175.05377 * 1 2 3 23 23 H 0.96994 * 119.99693 * 5.15451 * 7 6 4 24 24 H 1.00902 * 111.00307 * 151.04380 * 12 2 1 25 25 H 1.09000 * 109.47096 * 299.99418 * 13 12 2 26 26 H 1.08997 * 109.47396 * 59.99366 * 13 12 2 27 27 H 1.09011 * 109.46695 * 300.00113 * 15 14 13 28 28 H 1.08999 * 109.47446 * 59.99480 * 15 14 13 29 29 H 0.96698 * 113.99900 * 179.97438 * 16 15 14 30 30 H 1.09002 * 113.85883 * 337.33558 * 17 14 13 31 31 H 1.08992 * 113.86779 * 109.04650 * 17 14 13 32 32 H 1.09010 * 113.86066 * 221.76584 * 19 18 17 33 33 H 1.09003 * 113.86954 * 90.06983 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4115 -1.4456 -1.7207 6 6 3.2844 -0.4216 -1.7303 7 7 4.0018 0.5400 -1.1915 8 14 3.9617 -1.3961 -3.1730 9 1 3.0624 -1.2367 -4.3439 10 1 5.3165 -0.8945 -3.5167 11 1 4.0449 -2.8323 -2.8047 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 6 2.5951 -0.5331 3.5744 15 6 3.8796 -1.3179 3.3000 16 8 4.2895 -1.9923 4.4912 17 6 1.5097 -1.3508 4.2996 18 8 2.0930 -0.8306 5.5144 19 6 2.6507 0.3230 4.8536 20 1 -0.3634 0.4351 0.9310 21 1 -0.3634 0.5887 -0.8423 22 1 -0.3634 -1.0238 -0.0886 23 1 3.6832 0.9957 -0.3968 24 1 2.9173 -1.1205 1.0286 25 1 2.7588 1.0462 2.1182 26 1 1.0871 0.6163 2.5525 27 1 3.6971 -2.0498 2.5129 28 1 4.6642 -0.6311 2.9825 29 1 5.0991 -2.5114 4.3905 30 1 0.4948 -1.0002 4.1125 31 1 1.6184 -2.4291 4.1833 32 1 3.6625 0.5696 5.1757 33 1 1.9850 1.1860 4.8360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388797160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:00 Heat of formation + Delta-G solvation = -92.835199 kcal Electronic energy + Delta-G solvation = -15234.167486 eV Core-core repulsion = 12680.965689 eV Total energy + Delta-G solvation = -2553.201797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.70027 -37.98411 -37.27412 -34.63730 -32.58777 -29.86258 -27.49647 -27.04817 -26.55457 -24.88801 -22.15964 -19.93094 -19.14120 -18.28030 -17.17172 -16.99213 -16.46569 -16.15870 -15.63796 -15.56517 -15.38863 -15.03428 -14.48953 -13.56121 -13.42359 -13.29555 -12.78299 -12.72687 -12.65200 -12.21416 -12.07741 -11.93155 -11.77332 -11.37536 -10.88939 -10.75850 -10.55514 -10.41944 -9.12064 -8.65274 -6.40650 1.54719 1.60088 1.80350 2.54079 2.73494 2.97520 3.19212 3.28249 3.66957 3.85729 4.15177 4.34906 4.36691 4.45589 4.54363 4.58714 4.64402 4.69871 4.80449 4.85012 4.89996 5.01193 5.11016 5.16935 5.25417 5.46104 5.87167 6.17339 6.46992 6.56651 6.79956 6.85862 7.39983 8.71042 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036448 B = 0.008540 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.025218 B = 3277.958519 C = 3698.777102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.183 3.817 3 H -0.022 1.022 4 C -0.603 4.603 5 H 0.046 0.954 6 C -0.023 4.023 7 N -0.931 5.931 8 Si 1.113 2.887 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.072 3.928 14 C -0.122 4.122 15 C 0.103 3.897 16 O -0.570 6.570 17 C 0.065 3.935 18 O -0.392 6.392 19 C 0.053 3.947 20 H 0.045 0.955 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.256 0.744 24 H 0.328 0.672 25 H 0.010 0.990 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.393 0.607 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -2.482 8.149 8.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.075 3.925 3 H -0.005 1.005 4 C -0.642 4.642 5 H 0.065 0.935 6 C -0.222 4.222 7 N -0.569 5.569 8 Si 0.935 3.065 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.311 5.311 13 C -0.058 4.058 14 C -0.122 4.122 15 C 0.025 3.975 16 O -0.377 6.377 17 C -0.012 4.012 18 O -0.310 6.310 19 C -0.024 4.024 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.146 0.854 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.242 0.758 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.723 -2.635 7.790 8.255 hybrid contribution 0.027 0.702 0.260 0.749 sum -0.696 -1.933 8.049 8.307 Atomic orbital electron populations 1.21529 0.95817 1.00375 0.99144 1.19243 0.93302 0.91578 0.88340 1.00466 1.22372 1.03493 1.25665 1.12684 0.93534 1.27223 0.94589 0.96180 1.04254 1.70970 1.41768 1.21883 1.22234 0.82971 0.75627 0.75038 0.72888 1.19982 1.21192 1.19479 1.61159 1.32170 1.32692 1.05123 1.21938 0.99604 0.93616 0.90624 1.23645 0.96248 0.96898 0.95429 1.21622 0.94013 0.94863 0.86976 1.86526 1.48462 1.68219 1.34537 1.23886 0.96097 0.99690 0.81514 1.89662 1.72645 1.38071 1.30670 1.23999 0.99981 0.89938 0.88508 0.93633 0.94135 0.93564 0.93373 0.85403 0.97166 0.90479 0.93043 0.93667 0.75787 0.89411 0.89641 0.88978 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.42 71.98 0.68 -3.94 16 2 C 0.18 8.83 2.33 44.17 0.10 8.94 16 3 H -0.02 -1.19 6.33 -2.38 -0.02 -1.21 16 4 C -0.60 -32.41 8.29 25.60 0.21 -32.20 16 5 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 6 C -0.02 -1.24 5.45 84.65 0.46 -0.78 16 7 N -0.93 -53.65 13.63 21.45 0.29 -53.36 16 8 Si 1.11 48.02 29.91 68.60 2.05 50.08 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 12 N -0.68 -28.90 6.20 -495.47 -3.07 -31.97 16 13 C 0.07 2.59 5.02 86.30 0.43 3.02 16 14 C -0.12 -3.81 1.21 -51.48 -0.06 -3.87 16 15 C 0.10 3.20 6.00 71.98 0.43 3.63 16 16 O -0.57 -16.05 12.09 -132.22 -1.60 -17.65 16 17 C 0.06 1.98 8.08 72.30 0.58 2.56 16 18 O -0.39 -12.86 11.60 -132.22 -1.53 -14.39 16 19 C 0.05 1.50 8.08 72.29 0.58 2.09 16 20 H 0.04 1.67 7.35 -2.39 -0.02 1.65 16 21 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.26 14.89 6.66 -92.71 -0.62 14.28 16 24 H 0.33 14.98 6.47 -89.69 -0.58 14.40 16 25 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 26 H 0.08 2.61 7.20 -2.39 -0.02 2.59 16 27 H 0.05 1.70 6.84 -2.38 -0.02 1.68 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.39 7.36 9.12 -74.06 -0.68 6.69 16 30 H 0.09 2.47 7.99 -2.39 -0.02 2.45 16 31 H 0.09 2.64 8.10 -2.39 -0.02 2.62 16 32 H 0.09 2.48 8.10 -2.38 -0.02 2.46 16 33 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -62.13 271.17 -0.43 -62.56 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.00 Total: 25.28 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 3.43 Total: -20.56 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.78 Total: -85.33 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -3.13 Total: -32.03 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.05 Total: 50.08 kcal Total: -62.13 -0.43 -62.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388797160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.274 kcal (2) G-P(sol) polarization free energy of solvation -62.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds