Wall clock time and date at job start Mon Mar 30 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.50698 * 109.47605 * 120.00328 * 2 1 3 5 5 H 1.07997 * 119.99762 * 119.99564 * 4 2 1 6 6 C 1.37881 * 119.99831 * 300.00629 * 4 2 1 7 7 N 1.31512 * 120.00176 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99798 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47144 * 59.99300 * 8 6 4 10 10 H 1.48495 * 109.46913 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46961 * 299.99573 * 8 6 4 12 12 N 1.46905 * 109.46937 * 240.00532 * 2 1 3 13 13 C 1.46900 * 110.99700 * 84.99678 * 12 2 1 14 14 C 1.53007 * 109.46679 * 179.97438 * 13 12 2 15 15 C 1.53000 * 112.99812 * 309.66510 * 14 13 12 16 16 O 1.42903 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.54034 * 113.81494 * 81.49428 * 14 13 12 18 18 O 1.44448 * 85.42532 * 91.81073 * 17 14 13 19 19 C 1.44174 * 93.37973 * 24.08512 * 18 17 14 20 20 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46684 * 299.99188 * 1 2 3 22 22 H 1.08993 * 109.47495 * 59.99509 * 1 2 3 23 23 H 0.97001 * 120.00074 * 180.02562 * 7 6 4 24 24 H 1.00899 * 110.99958 * 321.04374 * 12 2 1 25 25 H 1.09001 * 109.47071 * 60.00208 * 13 12 2 26 26 H 1.08997 * 109.47635 * 299.99368 * 13 12 2 27 27 H 1.09002 * 109.47398 * 300.00269 * 15 14 13 28 28 H 1.09001 * 109.47194 * 60.00449 * 15 14 13 29 29 H 0.96700 * 113.99509 * 180.02562 * 16 15 14 30 30 H 1.09000 * 113.85942 * 205.90935 * 17 14 13 31 31 H 1.08995 * 113.86639 * 337.61806 * 17 14 13 32 32 H 1.09004 * 113.86740 * 221.76941 * 19 18 17 33 33 H 1.09002 * 113.86273 * 90.06750 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8299 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.8066 -1.1211 4.0079 10 1 1.8271 -0.4203 5.2203 11 1 1.8260 -2.5205 4.0075 12 7 2.0197 -0.6924 -1.1996 13 6 2.0823 0.2228 -2.3469 14 6 2.5961 -0.5326 -3.5743 15 6 3.8809 -1.3164 -3.2992 16 8 4.2924 -1.9896 -4.4907 17 6 1.5115 -1.3508 -4.3000 18 8 1.3190 -0.1661 -5.1037 19 6 2.6517 0.3238 -4.8534 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 0.7094 1.1614 3.4845 24 1 1.4495 -1.4978 -1.4102 25 1 2.7587 1.0464 -2.1182 26 1 1.0870 0.6165 -2.5526 27 1 4.6649 -0.6291 -2.9814 28 1 3.6986 -2.0485 -2.5124 29 1 5.1024 -2.5081 -4.3897 30 1 1.9009 -2.2030 -4.8571 31 1 0.6565 -1.6038 -3.6731 32 1 2.6991 1.3962 -4.6644 33 1 3.3900 -0.0159 -5.5798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388797162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:03 Heat of formation + Delta-G solvation = -64.449520 kcal Electronic energy + Delta-G solvation = -15009.390899 eV Core-core repulsion = 12457.419997 eV Total energy + Delta-G solvation = -2551.970902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51711 -36.38420 -35.90981 -32.84240 -30.88356 -27.92864 -26.38171 -25.24485 -24.92349 -23.79357 -20.22371 -18.54968 -17.29519 -16.31776 -16.01469 -15.85815 -15.49747 -14.70987 -13.99351 -13.91709 -13.49224 -13.11939 -12.50418 -12.35232 -11.86289 -11.67650 -11.43931 -10.92974 -10.85553 -10.70301 -10.59242 -10.18283 -10.06292 -9.94354 -9.69378 -9.33846 -9.01072 -8.38298 -7.30903 -6.00619 -4.04423 3.32254 3.36643 3.39315 3.87422 4.30522 4.36123 4.43900 4.95594 5.28386 5.30874 5.53072 5.57206 5.60724 5.67094 5.83314 6.01039 6.14812 6.20836 6.27660 6.35595 6.39060 6.68221 6.82782 7.07194 7.31899 7.70873 7.71887 7.84198 8.23394 8.46767 8.56369 9.02009 9.60909 11.06390 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045093 B = 0.007169 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.788478 B = 3904.773609 C = 4295.369891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.083 3.917 14 C -0.120 4.120 15 C 0.091 3.909 16 O -0.582 6.582 17 C 0.047 3.953 18 O -0.386 6.386 19 C 0.047 3.953 20 H 0.028 0.972 21 H 0.089 0.911 22 H 0.006 0.994 23 H 0.260 0.740 24 H 0.324 0.676 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.377 0.623 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -3.252 -10.860 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.047 4.047 14 C -0.121 4.121 15 C 0.013 3.987 16 O -0.388 6.388 17 C -0.029 4.029 18 O -0.305 6.305 19 C -0.030 4.030 20 H 0.047 0.953 21 H 0.108 0.892 22 H 0.025 0.975 23 H 0.070 0.930 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.224 0.776 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.144 -2.643 -10.913 11.968 hybrid contribution -0.066 -0.580 1.077 1.225 sum 4.078 -3.223 -9.835 11.124 Atomic orbital electron populations 1.22433 1.00637 0.99239 1.00597 1.19174 0.89677 0.94419 0.86320 0.94851 1.21096 1.30377 1.12468 0.89580 0.92020 1.24957 0.95321 0.95203 0.99057 1.69872 1.37177 1.23131 1.23495 0.86562 0.79124 0.79604 0.82073 1.20329 1.21443 1.20379 1.60868 1.57985 1.09041 1.03277 1.21629 0.99007 0.95277 0.88785 1.23742 0.95455 0.96340 0.96538 1.21911 0.95015 0.95705 0.86057 1.86368 1.47412 1.68349 1.36677 1.24029 0.97529 0.89627 0.91740 1.89654 1.30414 1.36539 1.73883 1.23984 0.85082 0.99154 0.94790 0.95330 0.89229 0.97530 0.92970 0.85933 0.91019 0.94800 0.93235 0.91257 0.77601 0.89561 0.89732 0.89739 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.22 2.57 -68.86 -0.18 5.04 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.50 -13.48 8.84 -34.44 -0.30 -13.79 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -13.83 5.37 -107.94 -0.58 -14.41 16 13 C 0.08 1.47 4.90 -3.82 -0.02 1.45 16 14 C -0.12 -1.80 1.08 -153.43 -0.17 -1.96 16 15 C 0.09 1.24 6.39 37.16 0.24 1.48 16 16 O -0.58 -6.98 11.73 -35.23 -0.41 -7.39 16 17 C 0.05 0.71 8.18 37.64 0.31 1.02 16 18 O -0.39 -6.40 12.39 -35.23 -0.44 -6.83 16 19 C 0.05 0.67 8.22 37.64 0.31 0.98 16 20 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 21 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 22 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.32 6.31 8.45 -39.29 -0.33 5.98 16 25 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 26 H 0.03 0.64 7.35 -51.93 -0.38 0.25 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.02 7.63 -51.93 -0.40 0.62 16 29 H 0.38 2.87 9.12 45.56 0.42 3.28 16 30 H 0.09 1.21 7.37 -51.93 -0.38 0.83 16 31 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 32 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.09 1.15 7.37 -51.93 -0.38 0.76 16 LS Contribution 271.36 15.07 4.09 4.09 Total: -1.00 -29.47 271.36 -5.52 -34.99 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.22 Total: 6.30 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.43 Total: -8.10 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.05 Total: -39.30 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.85 Total: -14.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.47 -5.52 -34.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388797162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.456 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds