Wall clock time and date at job start Mon Mar 30 2020 03:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.50698 * 109.47605 * 120.00328 * 2 1 3 5 5 H 1.07997 * 119.99762 * 119.99564 * 4 2 1 6 6 C 1.37881 * 119.99831 * 300.00629 * 4 2 1 7 7 N 1.31512 * 120.00176 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99798 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47144 * 59.99300 * 8 6 4 10 10 H 1.48495 * 109.46913 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46961 * 299.99573 * 8 6 4 12 12 N 1.46905 * 109.46937 * 240.00532 * 2 1 3 13 13 C 1.46900 * 110.99700 * 84.99678 * 12 2 1 14 14 C 1.53007 * 109.46679 * 179.97438 * 13 12 2 15 15 C 1.53000 * 112.99812 * 309.66510 * 14 13 12 16 16 O 1.42903 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.54034 * 113.81494 * 81.49428 * 14 13 12 18 18 O 1.44448 * 85.42532 * 91.81073 * 17 14 13 19 19 C 1.44174 * 93.37973 * 24.08512 * 18 17 14 20 20 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46684 * 299.99188 * 1 2 3 22 22 H 1.08993 * 109.47495 * 59.99509 * 1 2 3 23 23 H 0.97001 * 120.00074 * 180.02562 * 7 6 4 24 24 H 1.00899 * 110.99958 * 321.04374 * 12 2 1 25 25 H 1.09001 * 109.47071 * 60.00208 * 13 12 2 26 26 H 1.08997 * 109.47635 * 299.99368 * 13 12 2 27 27 H 1.09002 * 109.47398 * 300.00269 * 15 14 13 28 28 H 1.09001 * 109.47194 * 60.00449 * 15 14 13 29 29 H 0.96700 * 113.99509 * 180.02562 * 16 15 14 30 30 H 1.09000 * 113.85942 * 205.90935 * 17 14 13 31 31 H 1.08995 * 113.86639 * 337.61806 * 17 14 13 32 32 H 1.09004 * 113.86740 * 221.76941 * 19 18 17 33 33 H 1.09002 * 113.86273 * 90.06750 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8299 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.8066 -1.1211 4.0079 10 1 1.8271 -0.4203 5.2203 11 1 1.8260 -2.5205 4.0075 12 7 2.0197 -0.6924 -1.1996 13 6 2.0823 0.2228 -2.3469 14 6 2.5961 -0.5326 -3.5743 15 6 3.8809 -1.3164 -3.2992 16 8 4.2924 -1.9896 -4.4907 17 6 1.5115 -1.3508 -4.3000 18 8 1.3190 -0.1661 -5.1037 19 6 2.6517 0.3238 -4.8534 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 0.7094 1.1614 3.4845 24 1 1.4495 -1.4978 -1.4102 25 1 2.7587 1.0464 -2.1182 26 1 1.0870 0.6165 -2.5526 27 1 4.6649 -0.6291 -2.9814 28 1 3.6986 -2.0485 -2.5124 29 1 5.1024 -2.5081 -4.3897 30 1 1.9009 -2.2030 -4.8571 31 1 0.6565 -1.6038 -3.6731 32 1 2.6991 1.3962 -4.6644 33 1 3.3900 -0.0159 -5.5798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388797162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:02 Heat of formation + Delta-G solvation = -87.921108 kcal Electronic energy + Delta-G solvation = -15010.408703 eV Core-core repulsion = 12457.419997 eV Total energy + Delta-G solvation = -2552.988706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72103 -37.76000 -37.29022 -34.69017 -32.45511 -29.60412 -27.53255 -27.25757 -26.11657 -25.30156 -22.15051 -19.82743 -18.48636 -18.03360 -17.23815 -17.11839 -16.84755 -16.56099 -15.52484 -15.21809 -14.97965 -14.83451 -13.90203 -13.61698 -13.52379 -13.32387 -12.94101 -12.79145 -12.67281 -12.38712 -12.16015 -11.93686 -11.81908 -11.26514 -11.07830 -10.73440 -10.50943 -10.46736 -9.01680 -8.08899 -6.20204 1.44988 1.46184 1.53932 2.44302 2.70940 3.12411 3.19923 3.34907 3.60529 3.99895 4.22417 4.40329 4.48556 4.55259 4.60269 4.70309 4.77308 4.84382 4.90318 4.97662 5.06184 5.11164 5.17494 5.20496 5.40299 5.69109 5.80360 6.25797 6.60344 6.77105 6.93654 6.96295 7.49725 8.96691 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045093 B = 0.007169 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.788478 B = 3904.773609 C = 4295.369891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.513 4.513 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.676 5.676 13 C 0.089 3.911 14 C -0.120 4.120 15 C 0.101 3.899 16 O -0.585 6.585 17 C 0.050 3.950 18 O -0.409 6.409 19 C 0.053 3.947 20 H 0.033 0.967 21 H 0.062 0.938 22 H 0.021 0.979 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.398 0.602 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -4.230 -11.412 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.306 5.306 13 C -0.041 4.041 14 C -0.120 4.120 15 C 0.023 3.977 16 O -0.394 6.394 17 C -0.026 4.026 18 O -0.329 6.329 19 C -0.024 4.024 20 H 0.052 0.948 21 H 0.080 0.920 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.248 0.752 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.986 -3.642 -11.486 13.040 hybrid contribution -0.303 -0.269 1.180 1.247 sum 4.683 -3.911 -10.307 11.977 Atomic orbital electron populations 1.22257 1.00235 0.99288 0.99947 1.18939 0.89872 0.92855 0.87603 0.97921 1.21411 1.30435 1.12522 0.90818 0.92301 1.25736 0.95486 0.95872 1.01983 1.70008 1.38074 1.24329 1.24042 0.85566 0.78674 0.78641 0.78433 1.19782 1.21259 1.19632 1.60716 1.57557 1.09296 1.02996 1.21562 0.98491 0.95066 0.88970 1.23592 0.96264 0.96705 0.95479 1.21662 0.94332 0.95352 0.86326 1.86317 1.48894 1.68593 1.35619 1.24090 0.97368 0.89602 0.91564 1.89635 1.31732 1.37267 1.74239 1.24099 0.84416 0.99672 0.94218 0.94798 0.91957 0.96005 0.93040 0.85191 0.91576 0.95870 0.93097 0.92380 0.75195 0.88374 0.89898 0.88799 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.59 8.94 71.98 0.64 -6.94 16 2 C 0.22 10.71 2.57 44.17 0.11 10.82 16 3 H 0.00 0.16 7.80 -2.39 -0.02 0.14 16 4 C -0.51 -27.84 8.84 25.60 0.23 -27.62 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.68 -27.06 5.37 -495.43 -2.66 -29.72 16 13 C 0.09 3.09 4.90 86.31 0.42 3.51 16 14 C -0.12 -3.39 1.08 -51.48 -0.06 -3.45 16 15 C 0.10 2.56 6.39 71.98 0.46 3.02 16 16 O -0.59 -12.37 11.73 -148.98 -1.75 -14.12 16 17 C 0.05 1.41 8.18 72.30 0.59 2.00 16 18 O -0.41 -12.90 12.39 -148.98 -1.85 -14.75 16 19 C 0.05 1.39 8.22 72.29 0.59 1.99 16 20 H 0.03 1.54 8.13 -2.39 -0.02 1.52 16 21 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 22 H 0.02 0.93 7.45 -2.39 -0.02 0.92 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.33 12.57 8.45 -89.69 -0.76 11.81 16 25 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 26 H 0.02 0.86 7.35 -2.39 -0.02 0.84 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.61 7.63 -2.39 -0.02 1.59 16 29 H 0.40 4.85 9.12 -74.06 -0.68 4.17 16 30 H 0.10 2.53 7.37 -2.39 -0.02 2.51 16 31 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 32 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 33 H 0.10 2.38 7.37 -2.39 -0.02 2.36 16 Total: -1.00 -61.44 271.36 -0.87 -62.30 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.32 Total: 19.58 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.44 Total: -15.82 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -2.42 Total: -82.53 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -3.59 Total: -28.86 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.44 -0.87 -62.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388797162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.616 kcal (2) G-P(sol) polarization free energy of solvation -61.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds