Wall clock time and date at job start Mon Mar 30 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46894 * 2 1 4 4 C 1.50699 * 109.47412 * 239.99612 * 2 1 3 5 5 H 1.08006 * 119.99766 * 239.99983 * 4 2 1 6 6 C 1.37870 * 119.99849 * 59.99914 * 4 2 1 7 7 N 1.31517 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47026 * 89.99973 * 8 6 4 10 10 H 1.48496 * 109.47481 * 210.00298 * 8 6 4 11 11 H 1.48500 * 109.47039 * 330.00145 * 8 6 4 12 12 N 1.46907 * 109.47006 * 119.99381 * 2 1 3 13 13 C 1.46901 * 111.00286 * 275.00471 * 12 2 1 14 14 C 1.52998 * 109.47097 * 180.02562 * 13 12 2 15 15 H 1.08997 * 109.64658 * 60.26953 * 14 13 12 16 16 C 1.53264 * 109.55671 * 180.53797 * 14 13 12 17 17 C 1.53255 * 108.84541 * 174.35932 * 16 14 13 18 18 O 1.43088 * 108.94625 * 305.47882 * 17 16 14 19 19 C 1.42975 * 113.76937 * 57.96488 * 18 17 16 20 20 O 1.42962 * 109.47314 * 301.20949 * 19 18 17 21 21 H 1.08999 * 109.46894 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47243 * 300.00129 * 1 2 3 23 23 H 1.08998 * 109.46986 * 60.00655 * 1 2 3 24 24 H 0.96998 * 119.99815 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99796 * 38.95765 * 12 2 1 26 26 H 1.09002 * 109.47027 * 59.99279 * 13 12 2 27 27 H 1.08997 * 109.46643 * 300.00306 * 13 12 2 28 28 H 1.08999 * 109.57298 * 294.17429 * 16 14 13 29 29 H 1.09005 * 109.57429 * 54.42570 * 16 14 13 30 30 H 1.08992 * 109.56132 * 185.63541 * 17 16 14 31 31 H 1.09007 * 109.55415 * 65.31433 * 17 16 14 32 32 H 1.09002 * 109.47018 * 61.21320 * 19 18 17 33 33 H 1.09000 * 109.46711 * 181.20943 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4875 -0.1405 -5.1119 11 1 3.6311 -1.7567 -3.7117 12 7 2.0197 -0.6924 1.1996 13 6 2.0824 0.2227 2.3470 14 6 2.5961 -0.5327 3.5743 15 1 3.5937 -0.9232 3.3732 16 6 2.6496 0.4171 4.7760 17 6 3.0296 -0.3858 6.0250 18 8 2.1159 -1.4771 6.1714 19 6 2.0799 -2.3541 5.0428 20 8 1.7099 -1.6147 3.8764 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.7091 1.1611 -3.4845 25 1 1.4496 -1.4978 1.4102 26 1 1.0870 0.6165 2.5525 27 1 2.7587 1.0463 2.1182 28 1 3.3968 1.1902 4.5974 29 1 1.6730 0.8794 4.9199 30 1 2.9736 0.2573 6.9031 31 1 4.0436 -0.7708 5.9166 32 1 3.0650 -2.7967 4.8951 33 1 1.3495 -3.1436 5.2193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393715763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:15 Heat of formation + Delta-G solvation = -100.729319 kcal Electronic energy + Delta-G solvation = -14854.976470 eV Core-core repulsion = 12301.432358 eV Total energy + Delta-G solvation = -2553.544112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83992 -36.43320 -35.21598 -33.16561 -31.91188 -28.98997 -26.16158 -25.63371 -25.06259 -22.32868 -20.84859 -20.07180 -17.15218 -16.72659 -16.13420 -15.88589 -15.11342 -14.92779 -14.66138 -13.57669 -13.50714 -13.06095 -12.93008 -12.39942 -11.59018 -11.49361 -11.45973 -11.08628 -11.04408 -10.87940 -10.64198 -10.49177 -10.10223 -10.07553 -9.65363 -9.57959 -8.93750 -8.32720 -7.17552 -5.94748 -3.97867 3.35159 3.41116 3.45896 3.65656 3.85414 4.45855 4.64799 4.77158 4.94296 5.07036 5.34649 5.34978 5.36836 5.49168 5.59144 5.75497 5.78979 6.07421 6.21425 6.36616 6.75933 6.83679 6.92222 7.16026 7.26237 7.41689 7.79944 7.92886 8.32161 8.61842 8.67771 9.09540 9.67354 11.12388 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061452 B = 0.006003 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.534090 B = 4663.406155 C = 4779.009911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.070 3.930 14 C 0.090 3.910 15 H 0.068 0.932 16 C -0.187 4.187 17 C 0.059 3.941 18 O -0.402 6.402 19 C 0.222 3.778 20 O -0.387 6.387 21 H 0.028 0.972 22 H 0.005 0.995 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.334 0.666 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 -2.042 14.305 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.060 4.060 14 C 0.032 3.968 15 H 0.086 0.914 16 C -0.225 4.225 17 C -0.017 4.017 18 O -0.323 6.323 19 C 0.108 3.892 20 O -0.307 6.307 21 H 0.047 0.953 22 H 0.024 0.976 23 H 0.106 0.894 24 H 0.069 0.931 25 H 0.151 0.849 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.616 -1.910 14.031 14.614 hybrid contribution -0.336 -0.178 -0.714 0.809 sum 3.280 -2.088 13.316 13.872 Atomic orbital electron populations 1.22414 1.00674 0.99271 1.00369 1.19183 0.89689 0.94319 0.86588 0.95028 1.21168 1.30094 1.12352 0.89624 0.91969 1.24958 0.95400 0.95219 0.99040 1.69891 1.37465 1.23229 1.23272 0.86502 0.79221 0.79222 0.82450 1.20838 1.21407 1.19912 1.60807 1.58351 1.09181 1.02996 1.21901 0.99183 0.95387 0.89533 1.22363 0.93737 0.86792 0.93896 0.91434 1.22816 1.03983 0.99707 0.96036 1.22629 0.92172 0.88431 0.98512 1.88070 1.63528 1.39726 1.40963 1.23936 1.00146 0.89008 0.76111 1.88133 1.52871 1.45376 1.44349 0.95301 0.97633 0.89351 0.93116 0.84906 0.95538 0.90453 0.89674 0.90104 0.88630 0.92910 0.93840 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.94 37.16 0.33 -3.88 16 2 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -13.96 8.84 -34.44 -0.30 -14.27 16 5 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -15.15 6.23 -107.95 -0.67 -15.82 16 13 C 0.07 1.29 5.23 -3.82 -0.02 1.27 16 14 C 0.09 1.37 3.02 -26.60 -0.08 1.29 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.19 -2.28 5.64 -26.46 -0.15 -2.43 16 17 C 0.06 0.64 6.96 37.29 0.26 0.90 16 18 O -0.40 -5.31 10.90 -59.03 -0.64 -5.96 16 19 C 0.22 2.81 7.82 101.05 0.79 3.60 16 20 O -0.39 -6.23 9.89 -59.03 -0.58 -6.82 16 21 H 0.03 0.70 8.13 -51.93 -0.42 0.27 16 22 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 25 H 0.33 7.36 7.87 -39.29 -0.31 7.05 16 26 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 27 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 269.45 15.07 4.06 4.06 Total: -1.00 -30.25 269.45 -6.82 -37.08 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.15 Total: 3.01 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 0.56 Total: -6.82 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.05 Total: -41.30 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.23 Total: -12.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.25 -6.82 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393715763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.652 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds