Wall clock time and date at job start Mon Mar 30 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46894 * 2 1 4 4 C 1.50699 * 109.47412 * 239.99612 * 2 1 3 5 5 H 1.08006 * 119.99766 * 239.99983 * 4 2 1 6 6 C 1.37870 * 119.99849 * 59.99914 * 4 2 1 7 7 N 1.31517 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47026 * 89.99973 * 8 6 4 10 10 H 1.48496 * 109.47481 * 210.00298 * 8 6 4 11 11 H 1.48500 * 109.47039 * 330.00145 * 8 6 4 12 12 N 1.46907 * 109.47006 * 119.99381 * 2 1 3 13 13 C 1.46901 * 111.00286 * 275.00471 * 12 2 1 14 14 C 1.52998 * 109.47097 * 180.02562 * 13 12 2 15 15 H 1.08997 * 109.64658 * 60.26953 * 14 13 12 16 16 C 1.53264 * 109.55671 * 180.53797 * 14 13 12 17 17 C 1.53255 * 108.84541 * 174.35932 * 16 14 13 18 18 O 1.43088 * 108.94625 * 305.47882 * 17 16 14 19 19 C 1.42975 * 113.76937 * 57.96488 * 18 17 16 20 20 O 1.42962 * 109.47314 * 301.20949 * 19 18 17 21 21 H 1.08999 * 109.46894 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47243 * 300.00129 * 1 2 3 23 23 H 1.08998 * 109.46986 * 60.00655 * 1 2 3 24 24 H 0.96998 * 119.99815 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99796 * 38.95765 * 12 2 1 26 26 H 1.09002 * 109.47027 * 59.99279 * 13 12 2 27 27 H 1.08997 * 109.46643 * 300.00306 * 13 12 2 28 28 H 1.08999 * 109.57298 * 294.17429 * 16 14 13 29 29 H 1.09005 * 109.57429 * 54.42570 * 16 14 13 30 30 H 1.08992 * 109.56132 * 185.63541 * 17 16 14 31 31 H 1.09007 * 109.55415 * 65.31433 * 17 16 14 32 32 H 1.09002 * 109.47018 * 61.21320 * 19 18 17 33 33 H 1.09000 * 109.46711 * 181.20943 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4875 -0.1405 -5.1119 11 1 3.6311 -1.7567 -3.7117 12 7 2.0197 -0.6924 1.1996 13 6 2.0824 0.2227 2.3470 14 6 2.5961 -0.5327 3.5743 15 1 3.5937 -0.9232 3.3732 16 6 2.6496 0.4171 4.7760 17 6 3.0296 -0.3858 6.0250 18 8 2.1159 -1.4771 6.1714 19 6 2.0799 -2.3541 5.0428 20 8 1.7099 -1.6147 3.8764 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.7091 1.1611 -3.4845 25 1 1.4496 -1.4978 1.4102 26 1 1.0870 0.6165 2.5525 27 1 2.7587 1.0463 2.1182 28 1 3.3968 1.1902 4.5974 29 1 1.6730 0.8794 4.9199 30 1 2.9736 0.2573 6.9031 31 1 4.0436 -0.7708 5.9166 32 1 3.0650 -2.7967 4.8951 33 1 1.3495 -3.1436 5.2193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393715763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:15 Heat of formation + Delta-G solvation = -122.508342 kcal Electronic energy + Delta-G solvation = -14855.920879 eV Core-core repulsion = 12301.432358 eV Total energy + Delta-G solvation = -2554.488521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.89498 -37.99811 -36.57920 -34.75127 -33.48387 -30.68057 -27.59985 -27.19501 -26.64540 -23.65906 -22.14957 -21.86192 -18.47712 -18.22746 -17.50971 -16.97319 -16.71714 -16.36537 -15.99004 -15.19000 -14.91721 -14.70778 -14.20524 -13.88698 -13.53133 -13.13297 -12.86596 -12.76098 -12.43683 -12.35479 -12.18928 -12.09982 -12.05799 -11.79164 -11.14794 -10.80780 -10.63009 -10.48819 -8.99180 -8.09508 -6.21074 1.44254 1.44405 1.55977 2.44742 2.66202 2.86905 3.18607 3.43500 3.77504 3.99686 4.06458 4.10611 4.33802 4.41386 4.54852 4.60117 4.69839 4.77982 4.85243 4.86692 4.88932 5.09522 5.14937 5.39865 5.68133 5.80043 5.89405 6.20151 6.26199 6.63833 6.80558 6.93585 7.48966 8.96361 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061452 B = 0.006003 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.534090 B = 4663.406155 C = 4779.009911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.005 0.995 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.684 5.684 13 C 0.070 3.930 14 C 0.094 3.906 15 H 0.070 0.930 16 C -0.181 4.181 17 C 0.056 3.944 18 O -0.416 6.416 19 C 0.217 3.783 20 O -0.414 6.414 21 H 0.029 0.971 22 H 0.021 0.979 23 H 0.063 0.937 24 H 0.261 0.739 25 H 0.334 0.666 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -2.622 15.078 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.105 3.895 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.314 5.314 13 C -0.060 4.060 14 C 0.036 3.964 15 H 0.088 0.912 16 C -0.219 4.219 17 C -0.020 4.020 18 O -0.337 6.337 19 C 0.103 3.897 20 O -0.335 6.335 21 H 0.048 0.952 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.151 0.849 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.423 -2.492 14.830 15.675 hybrid contribution -0.588 0.020 -0.899 1.074 sum 3.835 -2.473 13.931 14.659 Atomic orbital electron populations 1.22230 1.00242 0.99078 0.99882 1.18975 0.89933 0.92867 0.87736 0.97744 1.21447 1.30514 1.12479 0.91042 0.92723 1.25753 0.95441 0.95878 1.01983 1.70014 1.38080 1.24273 1.24041 0.85468 0.78782 0.78170 0.78635 1.20136 1.20845 1.19440 1.60694 1.57849 1.09604 1.03294 1.21968 0.98967 0.95347 0.89691 1.22239 0.93247 0.87263 0.93632 0.91196 1.22781 1.04236 0.99604 0.95290 1.22840 0.92520 0.88058 0.98581 1.88052 1.64337 1.40361 1.40976 1.24223 1.01603 0.88862 0.74986 1.88088 1.53517 1.45941 1.45971 0.95209 0.96026 0.91793 0.92954 0.84870 0.96408 0.90313 0.87668 0.91083 0.86365 0.91257 0.92276 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.84 8.94 71.98 0.64 -7.20 16 2 C 0.21 11.21 2.57 44.17 0.11 11.32 16 3 H 0.00 0.26 7.80 -2.39 -0.02 0.25 16 4 C -0.52 -29.43 8.84 25.60 0.23 -29.21 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -54.09 11.32 21.45 0.24 -53.84 16 8 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.68 -30.43 6.23 -495.44 -3.09 -33.51 16 13 C 0.07 2.56 5.23 86.30 0.45 3.01 16 14 C 0.09 2.74 3.02 30.68 0.09 2.83 16 15 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 16 C -0.18 -4.03 5.64 30.77 0.17 -3.85 16 17 C 0.06 1.06 6.96 72.07 0.50 1.56 16 18 O -0.42 -10.05 10.90 -126.22 -1.38 -11.42 16 19 C 0.22 5.08 7.82 113.37 0.89 5.96 16 20 O -0.41 -12.86 9.89 -126.22 -1.25 -14.10 16 21 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 22 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 23 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.33 14.74 7.87 -89.69 -0.71 14.04 16 26 H 0.02 0.68 7.44 -2.39 -0.02 0.66 16 27 H 0.08 2.82 8.05 -2.39 -0.02 2.80 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -63.98 269.45 0.47 -63.51 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.38 Total: 17.55 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.54 Total: -14.70 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.84 Total: -87.36 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -2.62 Total: -25.53 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.98 0.47 -63.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393715763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.001 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds