Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46912 * 2 1 4 4 C 1.50698 * 109.46969 * 120.00067 * 2 1 3 5 5 H 1.07999 * 120.00142 * 119.99890 * 4 2 1 6 6 C 1.37884 * 119.99616 * 299.99861 * 4 2 1 7 7 N 1.31511 * 120.00387 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99590 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47259 * 89.99865 * 8 6 4 10 10 H 1.48503 * 109.47267 * 209.99879 * 8 6 4 11 11 H 1.48503 * 109.47297 * 329.99675 * 8 6 4 12 12 N 1.46897 * 109.47209 * 239.99903 * 2 1 3 13 13 C 1.46900 * 111.00152 * 117.55412 * 12 2 1 14 14 C 1.53002 * 110.45727 * 298.46486 * 13 12 2 15 15 O 1.42902 * 109.46765 * 302.06177 * 14 13 12 16 16 C 1.54508 * 110.62740 * 61.14550 * 13 12 2 17 17 C 1.54478 * 104.06499 * 118.70170 * 16 13 12 18 18 O 1.44696 * 104.83797 * 23.98063 * 17 16 13 19 19 C 1.44427 * 105.13559 * 319.52004 * 18 17 16 20 20 H 1.08994 * 109.47230 * 179.65366 * 1 2 3 21 21 H 1.08996 * 109.47061 * 299.65534 * 1 2 3 22 22 H 1.09000 * 109.46841 * 59.65225 * 1 2 3 23 23 H 0.96995 * 120.00064 * 179.97438 * 7 6 4 24 24 H 1.00907 * 110.99815 * 353.60395 * 12 2 1 25 25 H 1.08998 * 109.47196 * 62.05866 * 14 13 12 26 26 H 1.08997 * 109.47017 * 182.06328 * 14 13 12 27 27 H 0.96701 * 113.99504 * 180.02562 * 15 14 13 28 28 H 1.09002 * 110.51296 * 237.34929 * 16 13 12 29 29 H 1.09000 * 110.50934 * 0.05752 * 16 13 12 30 30 H 1.09000 * 110.37570 * 142.80817 * 17 16 13 31 31 H 1.09000 * 110.37527 * 265.04376 * 17 16 13 32 32 H 1.08997 * 110.37048 * 281.60551 * 19 18 17 33 33 H 1.08997 * 110.36986 * 159.38228 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3224 -1.1194 4.0079 9 1 3.6304 -0.5440 4.4118 10 1 1.3444 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.7934 0.2180 -2.0541 14 6 1.9158 1.3757 -2.5343 15 8 0.7881 0.8566 -3.2422 16 6 4.0305 0.7536 -1.2992 17 6 5.2277 0.2508 -2.1361 18 8 4.6911 0.0455 -3.4642 19 6 3.3893 -0.5449 -3.2578 20 1 -0.3633 -1.0276 -0.0062 21 1 -0.3633 0.5085 0.8930 22 1 -0.3633 0.5192 -0.8869 23 1 0.7089 1.1615 3.4843 24 1 1.2576 -1.1099 -1.7124 25 1 1.5717 1.9515 -1.6751 26 1 2.4946 2.0204 -3.1955 27 1 0.1870 1.5362 -3.5768 28 1 4.0169 1.8431 -1.2681 29 1 4.0701 0.3423 -0.2906 30 1 6.0173 1.0019 -2.1583 31 1 5.6077 -0.6865 -1.7299 32 1 3.4862 -1.6053 -3.0247 33 1 2.7657 -0.4068 -4.1410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393894460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = -93.338913 kcal Electronic energy + Delta-G solvation = -15584.380132 eV Core-core repulsion = 13031.156492 eV Total energy + Delta-G solvation = -2553.223640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.51316 -36.59303 -35.13469 -32.68336 -30.54212 -29.11898 -26.63540 -25.33009 -25.04907 -22.28969 -20.41604 -18.75841 -17.01931 -16.46083 -15.98317 -15.56054 -14.80225 -14.56994 -14.13295 -13.98527 -13.18757 -12.62316 -12.49355 -12.08696 -11.63999 -11.29131 -11.07799 -10.96107 -10.85249 -10.67204 -10.35099 -10.29075 -9.93994 -9.89612 -9.62289 -9.30940 -9.06395 -8.34942 -7.23945 -5.96938 -3.99781 3.32050 3.38879 3.43664 4.34697 4.42299 4.48724 5.08513 5.21034 5.31656 5.34752 5.44457 5.64796 5.67028 5.85575 6.07773 6.09303 6.21768 6.31046 6.38638 6.70841 6.78951 6.94933 7.07091 7.14718 7.41110 7.76438 7.85382 7.93722 8.31013 8.53783 8.68104 9.08356 9.65421 11.09212 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.010196 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.105318 B = 2745.495954 C = 3260.930790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.212 3.788 3 H 0.023 0.977 4 C -0.489 4.489 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.665 5.665 13 C 0.094 3.906 14 C 0.053 3.947 15 O -0.569 6.569 16 C -0.142 4.142 17 C 0.049 3.951 18 O -0.386 6.386 19 C 0.058 3.942 20 H 0.029 0.971 21 H 0.086 0.914 22 H 0.011 0.989 23 H 0.258 0.742 24 H 0.332 0.668 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.373 0.627 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 1.585 -8.675 9.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.105 3.895 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.296 5.296 13 C 0.001 3.999 14 C -0.026 4.026 15 O -0.373 6.373 16 C -0.180 4.180 17 C -0.028 4.028 18 O -0.305 6.305 19 C -0.019 4.019 20 H 0.048 0.952 21 H 0.105 0.895 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.149 0.851 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.219 0.781 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.756 0.910 -8.257 9.116 hybrid contribution -0.896 0.761 0.680 1.358 sum 2.860 1.672 -7.577 8.269 Atomic orbital electron populations 1.22252 0.99538 0.99404 1.00514 1.19176 0.90477 0.93349 0.86516 0.95973 1.21278 1.29901 1.12149 0.89519 0.91958 1.24968 0.95464 0.95245 0.98992 1.69879 1.37484 1.23328 1.23224 0.86554 0.78374 0.80150 0.82636 1.20887 1.21485 1.19930 1.61002 1.29006 1.32205 1.07408 1.22196 0.93740 0.91295 0.92670 1.23006 0.87618 0.96972 0.95033 1.86409 1.37699 1.37694 1.75513 1.22973 0.92534 1.00501 1.02011 1.23423 0.96413 1.00281 0.82698 1.89089 1.31740 1.82886 1.26749 1.23418 0.83571 0.97280 0.97637 0.95173 0.89536 0.97027 0.93176 0.85075 0.92821 0.94185 0.78082 0.91626 0.87262 0.89857 0.92107 0.91435 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 8.79 37.16 0.33 -3.48 16 2 C 0.21 5.17 1.39 -68.86 -0.10 5.07 16 3 H 0.02 0.59 5.72 -51.93 -0.30 0.29 16 4 C -0.49 -13.29 8.41 -34.44 -0.29 -13.58 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.46 5.30 -17.82 -0.09 1.37 16 7 N -0.90 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.67 -14.09 5.95 -92.68 -0.55 -14.64 16 13 C 0.09 1.72 0.67 -130.04 -0.09 1.64 16 14 C 0.05 0.90 5.48 37.16 0.20 1.11 16 15 O -0.57 -8.90 12.23 -35.23 -0.43 -9.33 16 16 C -0.14 -2.55 5.54 -25.16 -0.14 -2.69 16 17 C 0.05 0.76 7.63 37.93 0.29 1.05 16 18 O -0.39 -6.60 11.67 -35.23 -0.41 -7.01 16 19 C 0.06 0.98 6.81 37.93 0.26 1.24 16 20 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 22 H 0.01 0.24 7.82 -51.93 -0.41 -0.17 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.33 6.93 7.66 -39.29 -0.30 6.63 16 25 H 0.05 1.00 6.69 -51.93 -0.35 0.65 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.37 4.15 9.12 45.56 0.42 4.57 16 28 H 0.07 1.11 7.73 -51.93 -0.40 0.70 16 29 H 0.11 2.26 6.96 -51.93 -0.36 1.90 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.15 8.06 -51.93 -0.42 0.74 16 33 H 0.09 1.42 7.46 -51.93 -0.39 1.03 16 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -29.09 264.03 -5.49 -34.59 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.06 Total: 9.09 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.37 Total: -8.27 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.08 Total: -39.38 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.84 Total: -16.35 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.09 -5.49 -34.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.754 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds