Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46912 * 2 1 4 4 C 1.50698 * 109.46969 * 120.00067 * 2 1 3 5 5 H 1.07999 * 120.00142 * 119.99890 * 4 2 1 6 6 C 1.37884 * 119.99616 * 299.99861 * 4 2 1 7 7 N 1.31511 * 120.00387 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99590 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47259 * 89.99865 * 8 6 4 10 10 H 1.48503 * 109.47267 * 209.99879 * 8 6 4 11 11 H 1.48503 * 109.47297 * 329.99675 * 8 6 4 12 12 N 1.46897 * 109.47209 * 239.99903 * 2 1 3 13 13 C 1.46900 * 111.00152 * 117.55412 * 12 2 1 14 14 C 1.53002 * 110.45727 * 298.46486 * 13 12 2 15 15 O 1.42902 * 109.46765 * 302.06177 * 14 13 12 16 16 C 1.54508 * 110.62740 * 61.14550 * 13 12 2 17 17 C 1.54478 * 104.06499 * 118.70170 * 16 13 12 18 18 O 1.44696 * 104.83797 * 23.98063 * 17 16 13 19 19 C 1.44427 * 105.13559 * 319.52004 * 18 17 16 20 20 H 1.08994 * 109.47230 * 179.65366 * 1 2 3 21 21 H 1.08996 * 109.47061 * 299.65534 * 1 2 3 22 22 H 1.09000 * 109.46841 * 59.65225 * 1 2 3 23 23 H 0.96995 * 120.00064 * 179.97438 * 7 6 4 24 24 H 1.00907 * 110.99815 * 353.60395 * 12 2 1 25 25 H 1.08998 * 109.47196 * 62.05866 * 14 13 12 26 26 H 1.08997 * 109.47017 * 182.06328 * 14 13 12 27 27 H 0.96701 * 113.99504 * 180.02562 * 15 14 13 28 28 H 1.09002 * 110.51296 * 237.34929 * 16 13 12 29 29 H 1.09000 * 110.50934 * 0.05752 * 16 13 12 30 30 H 1.09000 * 110.37570 * 142.80817 * 17 16 13 31 31 H 1.09000 * 110.37527 * 265.04376 * 17 16 13 32 32 H 1.08997 * 110.37048 * 281.60551 * 19 18 17 33 33 H 1.08997 * 110.36986 * 159.38228 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3224 -1.1194 4.0079 9 1 3.6304 -0.5440 4.4118 10 1 1.3444 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.7934 0.2180 -2.0541 14 6 1.9158 1.3757 -2.5343 15 8 0.7881 0.8566 -3.2422 16 6 4.0305 0.7536 -1.2992 17 6 5.2277 0.2508 -2.1361 18 8 4.6911 0.0455 -3.4642 19 6 3.3893 -0.5449 -3.2578 20 1 -0.3633 -1.0276 -0.0062 21 1 -0.3633 0.5085 0.8930 22 1 -0.3633 0.5192 -0.8869 23 1 0.7089 1.1615 3.4843 24 1 1.2576 -1.1099 -1.7124 25 1 1.5717 1.9515 -1.6751 26 1 2.4946 2.0204 -3.1955 27 1 0.1870 1.5362 -3.5768 28 1 4.0169 1.8431 -1.2681 29 1 4.0701 0.3423 -0.2906 30 1 6.0173 1.0019 -2.1583 31 1 5.6077 -0.6865 -1.7299 32 1 3.4862 -1.6053 -3.0247 33 1 2.7657 -0.4068 -4.1410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393894460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = -116.864470 kcal Electronic energy + Delta-G solvation = -15585.400277 eV Core-core repulsion = 13031.156492 eV Total energy + Delta-G solvation = -2554.243784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92379 -37.98661 -36.74502 -34.52991 -32.25224 -30.57451 -28.30378 -27.20654 -26.61790 -23.68651 -22.22083 -20.29697 -18.40953 -18.20838 -17.57988 -16.95096 -16.66343 -16.03067 -15.55902 -15.37769 -14.97003 -14.49047 -14.01948 -13.57756 -13.14634 -12.99941 -12.85250 -12.73798 -12.56363 -12.27265 -12.18896 -11.84245 -11.73156 -11.62637 -11.14200 -10.87981 -10.64982 -10.43812 -8.97362 -8.05291 -6.15260 1.42242 1.44029 1.54137 2.45285 3.02896 3.16606 3.22381 3.69921 3.72832 3.95769 4.14192 4.31862 4.34307 4.50225 4.67123 4.78397 4.83780 4.88221 4.93166 5.00958 5.03590 5.11452 5.28363 5.45088 5.72289 5.78592 5.89639 6.35224 6.67569 6.81626 6.91989 6.97849 7.54006 8.98679 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.010196 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.105318 B = 2745.495954 C = 3260.930790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.223 3.777 3 H 0.002 0.998 4 C -0.505 4.505 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.668 5.668 13 C 0.084 3.916 14 C 0.064 3.936 15 O -0.577 6.577 16 C -0.143 4.143 17 C 0.053 3.947 18 O -0.389 6.389 19 C 0.067 3.933 20 H 0.026 0.974 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.259 0.741 24 H 0.333 0.667 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.394 0.606 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 1.514 -9.489 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 H 0.020 0.980 4 C -0.544 4.544 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.299 5.299 13 C -0.008 4.008 14 C -0.016 4.016 15 O -0.385 6.385 16 C -0.181 4.181 17 C -0.023 4.023 18 O -0.308 6.308 19 C -0.011 4.011 20 H 0.045 0.955 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.151 0.849 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.243 0.757 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.342 0.847 -9.093 10.112 hybrid contribution -1.087 0.799 0.885 1.614 sum 3.255 1.646 -8.208 8.982 Atomic orbital electron populations 1.22080 0.99360 0.98984 1.00081 1.18884 0.90382 0.92066 0.87145 0.98018 1.21529 1.29860 1.11948 0.91023 0.93136 1.25649 0.95679 0.95914 1.01596 1.69994 1.38248 1.24331 1.23740 0.85631 0.77971 0.79080 0.79359 1.20280 1.21187 1.19728 1.60858 1.28872 1.32907 1.07285 1.22351 0.93797 0.91725 0.92930 1.22765 0.87976 0.96093 0.94780 1.86360 1.37836 1.38973 1.75285 1.22926 0.93741 1.00854 1.00624 1.23489 0.95973 1.01193 0.81651 1.89090 1.31624 1.82831 1.27255 1.23328 0.83692 0.96792 0.97243 0.95474 0.92167 0.95097 0.93190 0.84912 0.95012 0.92174 0.75660 0.90895 0.90543 0.87013 0.91922 0.91792 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.04 8.79 71.98 0.63 -6.41 16 2 C 0.22 10.96 1.39 44.17 0.06 11.03 16 3 H 0.00 0.11 5.72 -2.39 -0.01 0.10 16 4 C -0.50 -27.67 8.41 25.60 0.22 -27.45 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.52 5.30 84.66 0.45 0.96 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.28 16 8 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.67 -28.06 5.95 -447.13 -2.66 -30.72 16 13 C 0.08 3.00 0.67 4.54 0.00 3.01 16 14 C 0.06 2.05 5.48 71.98 0.39 2.44 16 15 O -0.58 -16.79 12.23 -148.98 -1.82 -18.61 16 16 C -0.14 -5.03 5.54 31.61 0.18 -4.86 16 17 C 0.05 1.56 7.63 72.48 0.55 2.12 16 18 O -0.39 -12.33 11.67 -148.98 -1.74 -14.07 16 19 C 0.07 2.12 6.81 72.48 0.49 2.61 16 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.06 3.23 6.06 -2.39 -0.01 3.21 16 22 H 0.03 1.32 7.82 -2.39 -0.02 1.30 16 23 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 24 H 0.33 13.65 7.66 -89.69 -0.69 12.96 16 25 H 0.03 1.16 6.69 -2.39 -0.02 1.15 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.39 7.77 9.12 -74.06 -0.68 7.09 16 28 H 0.07 2.40 7.73 -2.39 -0.02 2.38 16 29 H 0.08 3.21 6.96 -2.39 -0.02 3.19 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 2.08 8.06 -2.39 -0.02 2.06 16 33 H 0.10 2.96 7.46 -2.39 -0.02 2.94 16 Total: -1.00 -60.84 264.03 -1.22 -62.06 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.25 Total: 24.23 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 2.98 Total: -16.55 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.42 Total: -82.99 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -3.56 Total: -32.68 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -60.84 -1.22 -62.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.807 kcal (2) G-P(sol) polarization free energy of solvation -60.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds