Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47533 * 2 1 4 4 C 1.50707 * 109.47092 * 240.00680 * 2 1 3 5 5 H 1.08006 * 119.99896 * 240.00484 * 4 2 1 6 6 C 1.37875 * 120.00204 * 60.00129 * 4 2 1 7 7 N 1.31516 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46947 * 90.00044 * 8 6 4 10 10 H 1.48502 * 109.47102 * 209.99784 * 8 6 4 11 11 H 1.48495 * 109.47086 * 329.99967 * 8 6 4 12 12 N 1.46896 * 109.47272 * 120.00950 * 2 1 3 13 13 C 1.46908 * 110.99943 * 227.80421 * 12 2 1 14 14 C 1.52998 * 110.45271 * 299.82590 * 13 12 2 15 15 O 1.42900 * 109.47431 * 302.50945 * 14 13 12 16 16 C 1.54505 * 110.51183 * 62.43235 * 13 12 2 17 17 C 1.54473 * 104.06392 * 118.77963 * 16 13 12 18 18 O 1.44423 * 104.80261 * 23.98283 * 17 16 13 19 19 C 1.44791 * 105.29298 * 319.44634 * 18 17 16 20 20 H 1.08999 * 109.47241 * 302.35534 * 1 2 3 21 21 H 1.09001 * 109.47070 * 62.35211 * 1 2 3 22 22 H 1.08998 * 109.47511 * 182.35100 * 1 2 3 23 23 H 0.96996 * 119.99867 * 179.97438 * 7 6 4 24 24 H 1.00899 * 111.00746 * 103.84864 * 12 2 1 25 25 H 1.09003 * 109.46466 * 182.50868 * 14 13 12 26 26 H 1.09001 * 109.47324 * 62.51575 * 14 13 12 27 27 H 0.96702 * 113.99926 * 177.11049 * 15 14 13 28 28 H 1.09001 * 110.50916 * 237.43069 * 16 13 12 29 29 H 1.09007 * 110.51268 * 0.13510 * 16 13 12 30 30 H 1.09002 * 110.37031 * 142.80749 * 17 16 13 31 31 H 1.09001 * 110.37726 * 265.03797 * 17 16 13 32 32 H 1.08992 * 110.42709 * 281.77774 * 19 18 17 33 33 H 1.09004 * 110.48413 * 159.32727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.3427 -2.1612 -4.4121 10 1 2.4865 -0.1409 -5.1124 11 1 3.6292 -1.7580 -3.7124 12 7 2.0196 -0.6927 1.1993 13 6 3.0636 0.0926 1.8713 14 6 4.2521 0.3150 0.9339 15 8 4.7606 -0.9485 0.5012 16 6 2.4959 1.4452 2.3562 17 6 2.6781 1.4008 3.8896 18 8 3.7563 0.4646 4.1060 19 6 3.5210 -0.6125 3.1675 20 1 -0.3634 0.5500 0.8681 21 1 -0.3633 0.4769 -0.9103 22 1 -0.3634 -1.0268 0.0422 23 1 0.7088 1.1616 -3.4843 24 1 2.3528 -1.6176 0.9721 25 1 5.0345 0.8599 1.4622 26 1 3.9287 0.8925 0.0678 27 1 5.4888 -0.8835 -0.1318 28 1 3.0620 2.2725 1.9281 29 1 1.4399 1.5304 2.0994 30 1 2.9496 2.3863 4.2681 31 1 1.7653 1.0487 4.3702 32 1 2.7375 -1.2742 3.5365 33 1 4.4396 -1.1722 2.9911 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393894462.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = -94.773077 kcal Electronic energy + Delta-G solvation = -15648.494833 eV Core-core repulsion = 13095.209003 eV Total energy + Delta-G solvation = -2553.285830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48103 -36.42570 -34.97632 -32.68560 -30.43362 -29.23797 -26.64810 -25.36576 -24.87214 -22.30539 -20.32588 -18.62891 -16.87110 -16.67482 -15.82553 -15.61397 -14.81632 -14.63113 -13.90539 -13.87255 -13.31441 -12.49820 -12.35631 -11.84309 -11.64429 -11.26926 -11.17590 -10.97256 -10.89666 -10.74446 -10.38545 -10.25400 -10.07462 -9.79855 -9.46859 -9.22235 -8.91188 -8.40838 -7.31381 -6.00608 -4.08624 3.26920 3.34284 3.37088 4.32297 4.40056 4.63190 5.09706 5.22081 5.30266 5.35458 5.42282 5.69570 5.74787 6.00459 6.08044 6.12128 6.23118 6.30843 6.44302 6.55595 6.87987 7.06482 7.17354 7.35619 7.48034 7.79397 8.10061 8.14724 8.16085 8.34168 8.69793 9.05024 9.57371 11.02618 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.009996 C = 0.008822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.759033 B = 2800.394570 C = 3173.253557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.208 3.792 3 H 0.026 0.974 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.673 5.673 13 C 0.095 3.905 14 C 0.062 3.938 15 O -0.563 6.563 16 C -0.141 4.141 17 C 0.049 3.951 18 O -0.385 6.385 19 C 0.057 3.943 20 H 0.008 0.992 21 H 0.080 0.920 22 H 0.025 0.975 23 H 0.259 0.741 24 H 0.341 0.659 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.373 0.627 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 0.830 7.438 8.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.044 0.956 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.305 5.305 13 C 0.002 3.998 14 C -0.017 4.017 15 O -0.367 6.367 16 C -0.179 4.179 17 C -0.028 4.028 18 O -0.304 6.304 19 C -0.020 4.020 20 H 0.027 0.973 21 H 0.099 0.901 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.160 0.840 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.218 0.782 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.593 0.987 8.269 9.069 hybrid contribution 1.286 -0.293 -2.233 2.594 sum 4.879 0.695 6.036 7.792 Atomic orbital electron populations 1.21732 0.98027 0.98772 0.99762 1.19141 0.92189 0.93780 0.84861 0.95632 1.21786 1.30785 1.12660 0.91119 0.92058 1.24943 0.95135 0.95000 0.98937 1.69887 1.36851 1.22982 1.23296 0.86630 0.79257 0.79414 0.82856 1.20761 1.21482 1.20034 1.61101 1.33339 1.05891 1.30130 1.22127 0.90292 0.93866 0.93534 1.22821 0.95245 0.85678 0.97998 1.86365 1.55194 1.29963 1.65226 1.22945 1.03334 0.96547 0.95066 1.23347 0.90557 0.93416 0.95459 1.89101 1.47777 1.33893 1.59610 1.23522 1.01243 0.89791 0.87413 0.97339 0.90104 0.95555 0.93057 0.84045 0.95125 0.92062 0.78164 0.91281 0.88913 0.89805 0.92346 0.91552 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.33 37.15 0.35 -2.69 16 2 C 0.21 5.04 1.36 -68.87 -0.09 4.94 16 3 H 0.03 0.67 5.86 -51.93 -0.30 0.37 16 4 C -0.52 -13.81 8.08 -34.44 -0.28 -14.09 16 5 H 0.06 1.64 7.42 -52.48 -0.39 1.25 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.89 11.30 55.43 0.63 -24.26 16 8 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.67 -14.19 5.90 -92.68 -0.55 -14.73 16 13 C 0.09 1.75 0.67 -130.03 -0.09 1.66 16 14 C 0.06 1.14 5.20 37.16 0.19 1.34 16 15 O -0.56 -10.15 12.59 -35.23 -0.44 -10.59 16 16 C -0.14 -2.39 5.46 -25.17 -0.14 -2.53 16 17 C 0.05 0.73 7.63 37.93 0.29 1.02 16 18 O -0.39 -6.50 11.66 -35.23 -0.41 -6.91 16 19 C 0.06 0.97 6.84 37.93 0.26 1.23 16 20 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 21 H 0.08 2.15 6.01 -51.93 -0.31 1.84 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.34 7.48 7.50 -39.29 -0.29 7.19 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.28 6.68 -51.93 -0.35 0.93 16 27 H 0.37 5.31 9.12 45.56 0.42 5.73 16 28 H 0.07 1.12 7.73 -51.93 -0.40 0.72 16 29 H 0.09 1.70 7.29 -51.92 -0.38 1.32 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.09 1.51 7.47 -51.93 -0.39 1.13 16 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -28.46 264.31 -5.48 -33.94 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.07 Total: 10.16 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 0.40 Total: -7.56 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.08 Total: -39.00 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.85 Total: -17.50 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.46 -5.48 -33.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894462.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.837 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds