Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86799 * 120.00306 * 2 1 4 4 H 1.48497 * 109.47114 * 270.00265 * 3 2 1 5 5 H 1.48500 * 109.47007 * 29.99898 * 3 2 1 6 6 H 1.48499 * 109.47753 * 150.00023 * 3 2 1 7 7 C 1.37881 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99997 * 180.27836 * 7 2 1 10 10 C 1.53002 * 109.46954 * 179.72166 * 9 7 2 11 11 N 1.46899 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99951 * 185.43576 * 11 10 9 13 13 C 1.52998 * 110.43480 * 305.67932 * 12 11 10 14 14 O 1.42898 * 109.47444 * 305.34586 * 13 12 11 15 15 C 1.54810 * 110.48892 * 68.36630 * 12 11 10 16 16 C 1.54999 * 102.08994 * 97.79554 * 15 12 11 17 17 O 1.44386 * 103.48968 * 37.02296 * 16 15 12 18 18 C 1.43738 * 106.97617 * 319.93892 * 17 16 15 19 19 H 0.96997 * 120.00404 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47024 * 299.71657 * 9 7 2 21 21 H 1.08999 * 109.47486 * 59.72264 * 9 7 2 22 22 H 1.08997 * 109.47343 * 299.99626 * 10 9 7 23 23 H 1.09006 * 109.47145 * 59.99420 * 10 9 7 24 24 H 1.00899 * 110.99941 * 61.48635 * 11 10 9 25 25 H 1.09001 * 109.47570 * 65.34270 * 13 12 11 26 26 H 1.09000 * 109.47321 * 185.34244 * 13 12 11 27 27 H 0.96704 * 114.00525 * 180.02562 * 14 13 12 28 28 H 1.08995 * 110.90457 * 215.99191 * 15 12 11 29 29 H 1.09003 * 110.90613 * 339.60212 * 15 12 11 30 30 H 1.09001 * 110.61777 * 278.52541 * 16 15 12 31 31 H 1.09001 * 110.75190 * 155.58747 * 16 15 12 32 32 H 1.09000 * 109.87950 * 267.08863 * 18 17 16 33 33 H 1.09001 * 110.00280 * 146.00940 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0058 10 6 4.0215 -2.6365 0.0108 11 7 5.4905 -2.6365 0.0164 12 6 6.0174 -4.0021 -0.1086 13 6 5.4240 -4.9049 0.9748 14 8 5.6591 -4.3250 2.2595 15 6 5.7178 -4.5717 -1.5166 16 6 7.0535 -4.3176 -2.2606 17 8 8.0542 -4.5592 -1.2482 18 6 7.5560 -3.9965 -0.0230 19 1 -0.4850 0.8400 0.0004 20 1 3.8785 -0.6820 -0.8838 21 1 3.8711 -0.6784 0.8963 22 1 3.6545 -3.1486 0.9003 23 1 3.6618 -3.1522 -0.8797 24 1 5.8489 -2.1851 0.8445 25 1 4.3509 -5.0085 0.8139 26 1 5.8949 -5.8868 0.9276 27 1 5.3094 -4.8452 2.9959 28 1 5.4975 -5.6380 -1.4660 29 1 4.8996 -4.0288 -1.9898 30 1 7.1061 -3.2879 -2.6142 31 1 7.1717 -5.0139 -3.0909 32 1 7.9172 -2.9742 0.0892 33 1 7.8823 -4.5998 0.8242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393895900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -98.101845 kcal Electronic energy + Delta-G solvation = -15018.200532 eV Core-core repulsion = 12464.770356 eV Total energy + Delta-G solvation = -2553.430176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90866 -36.94351 -35.22492 -33.01601 -31.25052 -29.73544 -28.11832 -25.73880 -23.93189 -22.57938 -20.34867 -19.37183 -17.34877 -16.84270 -16.59492 -15.91941 -15.05710 -14.96020 -14.51121 -14.10147 -13.86473 -13.03884 -12.74790 -12.58966 -12.27323 -11.94908 -11.46988 -11.37883 -11.20416 -10.91483 -10.76319 -10.19959 -10.03325 -9.76002 -9.70804 -9.57882 -9.21733 -8.53651 -7.97289 -6.04772 -4.03026 3.33342 3.40192 3.46039 3.99368 4.02187 4.46670 4.50748 4.66922 4.92893 5.08414 5.24852 5.30201 5.31162 5.44292 5.64479 5.75173 5.80707 5.86133 5.97566 6.06830 6.16097 6.32514 6.79385 6.83901 7.15469 7.39884 7.52961 7.61017 7.76073 7.90708 8.52560 8.98760 9.57972 11.08552 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.039594 B = 0.007254 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.004178 B = 3858.926625 C = 4056.680135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.008 4.008 10 C 0.072 3.928 11 N -0.672 5.672 12 C 0.085 3.915 13 C 0.052 3.948 14 O -0.569 6.569 15 C -0.144 4.144 16 C 0.054 3.946 17 O -0.384 6.384 18 C 0.062 3.938 19 H 0.263 0.737 20 H 0.019 0.981 21 H 0.014 0.986 22 H 0.027 0.973 23 H 0.062 0.938 24 H 0.345 0.655 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.379 0.621 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.821 -9.813 0.132 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.045 4.045 10 C -0.056 4.056 11 N -0.303 5.303 12 C -0.007 4.007 13 C -0.027 4.027 14 O -0.374 6.374 15 C -0.182 4.182 16 C -0.022 4.022 17 O -0.303 6.303 18 C -0.015 4.015 19 H 0.073 0.927 20 H 0.038 0.962 21 H 0.032 0.968 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.164 0.836 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.226 0.774 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.209 -9.198 -0.939 16.123 hybrid contribution -0.506 0.183 1.297 1.404 sum 12.702 -9.015 0.358 15.580 Atomic orbital electron populations 1.69909 1.06330 1.26931 1.51187 1.25000 0.94723 0.99229 0.94454 0.86732 0.80339 0.83378 0.78559 1.20270 1.21510 1.18923 1.21066 0.89423 0.94437 1.51020 0.91240 1.19512 0.96473 0.91826 0.96728 1.22000 0.84069 1.00162 0.99379 1.60853 1.10277 1.13632 1.45588 1.22307 0.94803 0.90207 0.93429 1.22899 0.99998 0.95773 0.84077 1.86422 1.82643 1.52654 1.15680 1.23171 0.99669 1.01062 0.94276 1.23487 0.86043 1.01351 0.91362 1.88812 1.42782 1.79672 1.19029 1.23178 0.91653 0.99288 0.87357 0.92734 0.96237 0.96776 0.95478 0.91938 0.83622 0.92723 0.93599 0.77358 0.90664 0.88571 0.91458 0.89311 0.91476 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.18 4.35 -27.88 -0.12 -0.30 16 10 C 0.07 1.44 4.75 -3.82 -0.02 1.42 16 11 N -0.67 -11.50 5.92 -98.42 -0.58 -12.08 16 12 C 0.09 1.21 0.66 -130.07 -0.09 1.13 16 13 C 0.05 0.68 4.93 37.16 0.18 0.86 16 14 O -0.57 -7.37 12.96 -35.23 -0.46 -7.83 16 15 C -0.14 -1.88 6.15 -24.72 -0.15 -2.03 16 16 C 0.05 0.68 7.72 38.21 0.29 0.97 16 17 O -0.38 -5.49 11.52 -35.23 -0.41 -5.90 16 18 C 0.06 0.86 6.99 37.73 0.26 1.12 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.02 0.48 7.58 -51.93 -0.39 0.08 16 21 H 0.01 0.35 7.19 -51.93 -0.37 -0.03 16 22 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 23 H 0.06 1.25 6.41 -51.93 -0.33 0.92 16 24 H 0.35 5.97 8.37 -39.29 -0.33 5.64 16 25 H 0.05 0.75 6.87 -51.93 -0.36 0.39 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.38 3.29 9.12 45.56 0.42 3.70 16 28 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 29 H 0.10 1.37 6.43 -51.93 -0.33 1.03 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.08 1.07 7.64 -51.93 -0.40 0.67 16 LS Contribution 266.09 15.07 4.01 4.01 Total: -1.00 -31.98 266.09 -5.52 -37.50 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.12 Total: 4.38 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.07 Total: -10.26 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.19 Total: -39.36 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.86 Total: -13.73 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.98 -5.52 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393895900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.602 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds