Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86799 * 120.00306 * 2 1 4 4 H 1.48497 * 109.47114 * 270.00265 * 3 2 1 5 5 H 1.48500 * 109.47007 * 29.99898 * 3 2 1 6 6 H 1.48499 * 109.47753 * 150.00023 * 3 2 1 7 7 C 1.37881 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99997 * 180.27836 * 7 2 1 10 10 C 1.53002 * 109.46954 * 179.72166 * 9 7 2 11 11 N 1.46899 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99951 * 185.43576 * 11 10 9 13 13 C 1.52998 * 110.43480 * 305.67932 * 12 11 10 14 14 O 1.42898 * 109.47444 * 305.34586 * 13 12 11 15 15 C 1.54810 * 110.48892 * 68.36630 * 12 11 10 16 16 C 1.54999 * 102.08994 * 97.79554 * 15 12 11 17 17 O 1.44386 * 103.48968 * 37.02296 * 16 15 12 18 18 C 1.43738 * 106.97617 * 319.93892 * 17 16 15 19 19 H 0.96997 * 120.00404 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47024 * 299.71657 * 9 7 2 21 21 H 1.08999 * 109.47486 * 59.72264 * 9 7 2 22 22 H 1.08997 * 109.47343 * 299.99626 * 10 9 7 23 23 H 1.09006 * 109.47145 * 59.99420 * 10 9 7 24 24 H 1.00899 * 110.99941 * 61.48635 * 11 10 9 25 25 H 1.09001 * 109.47570 * 65.34270 * 13 12 11 26 26 H 1.09000 * 109.47321 * 185.34244 * 13 12 11 27 27 H 0.96704 * 114.00525 * 180.02562 * 14 13 12 28 28 H 1.08995 * 110.90457 * 215.99191 * 15 12 11 29 29 H 1.09003 * 110.90613 * 339.60212 * 15 12 11 30 30 H 1.09001 * 110.61777 * 278.52541 * 16 15 12 31 31 H 1.09001 * 110.75190 * 155.58747 * 16 15 12 32 32 H 1.09000 * 109.87950 * 267.08863 * 18 17 16 33 33 H 1.09001 * 110.00280 * 146.00940 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0058 10 6 4.0215 -2.6365 0.0108 11 7 5.4905 -2.6365 0.0164 12 6 6.0174 -4.0021 -0.1086 13 6 5.4240 -4.9049 0.9748 14 8 5.6591 -4.3250 2.2595 15 6 5.7178 -4.5717 -1.5166 16 6 7.0535 -4.3176 -2.2606 17 8 8.0542 -4.5592 -1.2482 18 6 7.5560 -3.9965 -0.0230 19 1 -0.4850 0.8400 0.0004 20 1 3.8785 -0.6820 -0.8838 21 1 3.8711 -0.6784 0.8963 22 1 3.6545 -3.1486 0.9003 23 1 3.6618 -3.1522 -0.8797 24 1 5.8489 -2.1851 0.8445 25 1 4.3509 -5.0085 0.8139 26 1 5.8949 -5.8868 0.9276 27 1 5.3094 -4.8452 2.9959 28 1 5.4975 -5.6380 -1.4660 29 1 4.8996 -4.0288 -1.9898 30 1 7.1061 -3.2879 -2.6142 31 1 7.1717 -5.0139 -3.0909 32 1 7.9172 -2.9742 0.0892 33 1 7.8823 -4.5998 0.8242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393895900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -125.076495 kcal Electronic energy + Delta-G solvation = -15019.370240 eV Core-core repulsion = 12464.770356 eV Total energy + Delta-G solvation = -2554.599885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.01102 -38.02756 -36.60452 -34.96597 -32.89601 -30.95667 -29.61482 -26.84925 -25.70507 -23.68941 -22.12657 -20.57580 -18.93095 -18.31612 -17.85831 -16.98636 -16.40288 -16.20950 -16.09944 -15.48460 -15.25347 -14.73514 -14.54123 -13.78758 -13.48969 -13.36351 -13.01441 -12.92661 -12.48589 -12.33847 -11.92991 -11.86732 -11.68513 -11.54967 -11.39293 -11.00243 -10.77742 -10.63102 -9.35443 -8.31129 -6.35261 1.36362 1.37378 1.50387 2.35680 2.94257 2.98478 3.04763 3.38917 3.54449 3.88394 4.09162 4.24449 4.30914 4.38410 4.46391 4.54670 4.62626 4.74875 4.81195 4.86978 4.92076 4.99743 5.06870 5.31064 5.48417 5.60931 5.79667 6.16060 6.24372 6.45948 6.72586 6.79165 7.29831 8.85400 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.039594 B = 0.007254 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.004178 B = 3858.926625 C = 4056.680135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.002 4.002 10 C 0.090 3.910 11 N -0.672 5.672 12 C 0.078 3.922 13 C 0.057 3.943 14 O -0.584 6.584 15 C -0.143 4.143 16 C 0.054 3.946 17 O -0.394 6.394 18 C 0.067 3.933 19 H 0.267 0.733 20 H 0.019 0.981 21 H 0.014 0.986 22 H 0.020 0.980 23 H 0.060 0.940 24 H 0.345 0.655 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.397 0.603 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.653 -9.916 0.107 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.040 4.040 10 C -0.039 4.039 11 N -0.303 5.303 12 C -0.014 4.014 13 C -0.023 4.023 14 O -0.392 6.392 15 C -0.181 4.181 16 C -0.022 4.022 17 O -0.313 6.313 18 C -0.010 4.010 19 H 0.076 0.924 20 H 0.038 0.962 21 H 0.032 0.968 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.163 0.837 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.247 0.753 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.055 -9.329 -0.955 17.737 hybrid contribution -1.107 0.126 1.311 1.721 sum 13.948 -9.202 0.357 16.714 Atomic orbital electron populations 1.70050 1.08209 1.28209 1.52556 1.25958 0.95589 1.03414 0.94022 0.85631 0.79355 0.78292 0.79173 1.19234 1.20885 1.17381 1.21394 0.91854 0.93206 1.50599 0.94828 1.19399 0.93492 0.94629 0.96467 1.21625 0.86080 0.97226 0.98980 1.60748 1.08038 1.15965 1.45590 1.22461 0.95324 0.88857 0.94741 1.22812 0.99311 0.96410 0.83768 1.86375 1.82898 1.53678 1.16293 1.23196 0.99485 1.02006 0.93450 1.23593 0.85284 1.01721 0.91634 1.88808 1.43399 1.79666 1.19418 1.23135 0.90906 0.99256 0.87720 0.92427 0.96214 0.96765 0.96217 0.92148 0.83691 0.93911 0.91195 0.75273 0.88690 0.90032 0.92273 0.86747 0.92110 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.95 45.24 27.47 68.60 1.88 47.12 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.53 -31.05 9.66 25.60 0.25 -30.81 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C 0.00 -0.10 4.35 29.85 0.13 0.03 16 10 C 0.09 3.55 4.75 86.30 0.41 3.96 16 11 N -0.67 -22.13 5.92 -465.28 -2.76 -24.88 16 12 C 0.08 2.08 0.66 4.52 0.00 2.09 16 13 C 0.06 1.35 4.93 71.98 0.35 1.71 16 14 O -0.58 -14.01 12.96 -148.98 -1.93 -15.94 16 15 C -0.14 -3.47 6.15 31.90 0.20 -3.27 16 16 C 0.05 1.22 7.72 72.67 0.56 1.79 16 17 O -0.39 -10.31 11.52 -148.98 -1.72 -12.03 16 18 C 0.07 1.69 6.99 72.35 0.51 2.19 16 19 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 20 H 0.02 0.94 7.58 -2.38 -0.02 0.92 16 21 H 0.01 0.68 7.19 -2.39 -0.02 0.66 16 22 H 0.02 0.80 6.74 -2.39 -0.02 0.79 16 23 H 0.06 2.41 6.41 -2.38 -0.02 2.39 16 24 H 0.34 11.42 8.37 -89.69 -0.75 10.67 16 25 H 0.04 1.12 6.87 -2.39 -0.02 1.10 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.40 6.10 9.12 -74.05 -0.68 5.43 16 28 H 0.09 1.91 7.88 -2.39 -0.02 1.89 16 29 H 0.08 2.23 6.43 -2.39 -0.02 2.22 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16 33 H 0.10 2.19 7.64 -2.39 -0.02 2.17 16 Total: -1.00 -67.95 266.09 -1.72 -69.67 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.37 Total: 17.08 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 2.87 Total: -21.42 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.46 Total: -84.48 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -3.65 Total: -27.97 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -67.95 -1.72 -69.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393895900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.406 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds