Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48509 * 109.47153 * 240.00085 * 3 2 1 5 5 H 1.48503 * 109.47521 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47181 * 120.00093 * 3 2 1 7 7 C 1.37881 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46659 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46717 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99838 * 174.52821 * 11 10 9 13 13 C 1.53008 * 110.45705 * 57.68689 * 12 11 10 14 14 O 1.42903 * 109.46866 * 55.41075 * 13 12 11 15 15 C 1.54513 * 110.51436 * 295.08637 * 12 11 10 16 16 C 1.54482 * 104.06002 * 241.35445 * 15 12 11 17 17 O 1.44418 * 104.80559 * 23.97740 * 16 15 12 18 18 C 1.44429 * 105.27538 * 319.48727 * 17 16 15 19 19 H 0.97001 * 120.00318 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46828 * 60.00274 * 9 7 2 21 21 H 1.08992 * 109.46974 * 300.00240 * 9 7 2 22 22 H 1.09001 * 109.47104 * 60.00059 * 10 9 7 23 23 H 1.08994 * 109.47227 * 300.00228 * 10 9 7 24 24 H 1.00896 * 111.00156 * 298.48054 * 11 10 9 25 25 H 1.08995 * 109.46844 * 175.40494 * 13 12 11 26 26 H 1.09002 * 109.47217 * 295.40864 * 13 12 11 27 27 H 0.96696 * 113.99875 * 180.02562 * 14 13 12 28 28 H 1.09005 * 110.50584 * 359.97438 * 15 12 11 29 29 H 1.09001 * 110.51444 * 122.70647 * 15 12 11 30 30 H 1.09000 * 110.36829 * 142.80572 * 16 15 12 31 31 H 1.08997 * 110.37033 * 265.03242 * 16 15 12 32 32 H 1.08998 * 110.37322 * 281.68223 * 18 17 16 33 33 H 1.08994 * 110.37346 * 159.34345 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4300 -6.0727 -0.1319 13 6 3.4587 -6.0623 1.0007 14 8 2.7815 -6.0437 2.2589 15 6 3.1369 -6.0428 -1.5055 16 6 2.6958 -7.3590 -2.1834 17 8 1.4494 -7.7051 -1.5412 18 6 1.6455 -7.4034 -0.1424 19 1 -0.4851 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8904 24 1 0.9408 -5.0231 0.8266 25 1 4.0797 -6.9557 0.9355 26 1 4.0868 -5.1759 0.9129 27 1 3.3731 -6.0359 3.0238 28 1 2.8040 -5.1835 -2.0877 29 1 4.2193 -6.0231 -1.3777 30 1 2.5419 -7.2028 -3.2511 31 1 3.4392 -8.1387 -2.0179 32 1 2.2269 -8.1904 0.3377 33 1 0.6847 -7.2814 0.3577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393895901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = -100.333096 kcal Electronic energy + Delta-G solvation = -14960.412164 eV Core-core repulsion = 12406.885234 eV Total energy + Delta-G solvation = -2553.526930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.81793 -36.87309 -35.09291 -33.01603 -31.09527 -29.59287 -27.67001 -25.56258 -23.92128 -22.73176 -20.53615 -19.23414 -17.39024 -16.47463 -15.93853 -15.80455 -15.45200 -15.01112 -14.47805 -14.32573 -13.56423 -12.84873 -12.71047 -12.33237 -12.09520 -11.76820 -11.35288 -11.12529 -11.03652 -10.94369 -10.70757 -10.54556 -10.01214 -9.89214 -9.69092 -9.30355 -9.10661 -8.32545 -7.76118 -5.96935 -3.99807 3.33764 3.38357 3.40232 3.95818 4.23280 4.45109 4.62524 4.77128 4.95720 5.15954 5.19962 5.28184 5.38538 5.41864 5.63917 5.71613 5.80342 5.86429 5.98862 6.23923 6.32884 6.46504 6.88625 7.03535 7.51588 7.58617 7.77774 7.86057 8.02714 8.13544 8.46399 9.07485 9.63487 11.14451 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.006665 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.324755 B = 4200.294408 C = 4384.356467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.028 3.972 10 C 0.065 3.935 11 N -0.665 5.665 12 C 0.085 3.915 13 C 0.052 3.948 14 O -0.567 6.567 15 C -0.144 4.144 16 C 0.049 3.951 17 O -0.370 6.370 18 C 0.065 3.935 19 H 0.261 0.739 20 H 0.024 0.976 21 H 0.014 0.986 22 H 0.017 0.983 23 H 0.056 0.944 24 H 0.345 0.655 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.378 0.622 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.998 -13.947 0.636 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.296 5.296 12 C -0.008 4.008 13 C -0.029 4.029 14 O -0.372 6.372 15 C -0.182 4.182 16 C -0.028 4.028 17 O -0.288 6.288 18 C -0.012 4.012 19 H 0.071 0.929 20 H 0.043 0.957 21 H 0.032 0.968 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.164 0.836 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.225 0.775 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.964 -13.882 -0.538 15.540 hybrid contribution 1.703 1.108 1.408 2.472 sum 8.668 -12.774 0.870 15.462 Atomic orbital electron populations 1.69966 1.06014 1.26665 1.50491 1.25000 0.94830 0.99143 0.95350 0.86663 0.79573 0.83239 0.78513 1.20272 1.21236 1.20347 1.21137 0.92830 0.91111 1.51048 0.92971 1.19024 0.94008 0.90180 0.97749 1.22184 0.97172 0.88584 0.98351 1.60812 1.22365 1.00798 1.45659 1.22332 0.92069 0.93658 0.92697 1.22957 0.95236 0.99831 0.84826 1.86448 1.37742 1.97652 1.15346 1.23025 0.99758 1.00013 0.95434 1.23340 0.86501 0.94672 0.98304 1.89131 1.33859 1.86095 1.19712 1.23361 1.01039 0.93489 0.83327 0.92931 0.95727 0.96767 0.96455 0.92565 0.83615 0.93910 0.92847 0.77528 0.88541 0.90882 0.89116 0.92888 0.92505 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.75 5.28 -27.88 -0.15 0.60 16 10 C 0.07 1.39 4.81 -3.82 -0.02 1.37 16 11 N -0.67 -12.52 5.98 -98.37 -0.59 -13.11 16 12 C 0.09 1.28 0.72 -130.03 -0.09 1.19 16 13 C 0.05 0.67 5.12 37.16 0.19 0.86 16 14 O -0.57 -7.50 12.98 -35.23 -0.46 -7.95 16 15 C -0.14 -1.97 5.82 -25.16 -0.15 -2.12 16 16 C 0.05 0.61 7.63 37.93 0.29 0.90 16 17 O -0.37 -5.74 11.65 -35.23 -0.41 -6.15 16 18 C 0.07 0.93 6.76 37.93 0.26 1.18 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 20 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.37 6.77 -51.93 -0.35 0.02 16 23 H 0.06 1.18 6.56 -51.93 -0.34 0.84 16 24 H 0.34 6.61 8.26 -39.29 -0.32 6.29 16 25 H 0.04 0.46 8.05 -51.93 -0.42 0.04 16 26 H 0.05 0.74 6.85 -51.93 -0.36 0.38 16 27 H 0.38 3.29 9.12 45.56 0.42 3.71 16 28 H 0.10 1.52 6.86 -51.93 -0.36 1.17 16 29 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.70 7.80 -51.93 -0.41 0.29 16 33 H 0.10 1.42 7.96 -51.93 -0.41 1.00 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -32.43 270.04 -5.93 -38.36 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.18 Total: 4.34 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.08 Total: -9.78 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.15 Total: -39.74 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.87 Total: -14.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.43 -5.93 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393895901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.969 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds