Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48509 * 109.47153 * 240.00085 * 3 2 1 5 5 H 1.48503 * 109.47521 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47181 * 120.00093 * 3 2 1 7 7 C 1.37881 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46659 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46717 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99838 * 174.52821 * 11 10 9 13 13 C 1.53008 * 110.45705 * 57.68689 * 12 11 10 14 14 O 1.42903 * 109.46866 * 55.41075 * 13 12 11 15 15 C 1.54513 * 110.51436 * 295.08637 * 12 11 10 16 16 C 1.54482 * 104.06002 * 241.35445 * 15 12 11 17 17 O 1.44418 * 104.80559 * 23.97740 * 16 15 12 18 18 C 1.44429 * 105.27538 * 319.48727 * 17 16 15 19 19 H 0.97001 * 120.00318 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46828 * 60.00274 * 9 7 2 21 21 H 1.08992 * 109.46974 * 300.00240 * 9 7 2 22 22 H 1.09001 * 109.47104 * 60.00059 * 10 9 7 23 23 H 1.08994 * 109.47227 * 300.00228 * 10 9 7 24 24 H 1.00896 * 111.00156 * 298.48054 * 11 10 9 25 25 H 1.08995 * 109.46844 * 175.40494 * 13 12 11 26 26 H 1.09002 * 109.47217 * 295.40864 * 13 12 11 27 27 H 0.96696 * 113.99875 * 180.02562 * 14 13 12 28 28 H 1.09005 * 110.50584 * 359.97438 * 15 12 11 29 29 H 1.09001 * 110.51444 * 122.70647 * 15 12 11 30 30 H 1.09000 * 110.36829 * 142.80572 * 16 15 12 31 31 H 1.08997 * 110.37033 * 265.03242 * 16 15 12 32 32 H 1.08998 * 110.37322 * 281.68223 * 18 17 16 33 33 H 1.08994 * 110.37346 * 159.34345 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4300 -6.0727 -0.1319 13 6 3.4587 -6.0623 1.0007 14 8 2.7815 -6.0437 2.2589 15 6 3.1369 -6.0428 -1.5055 16 6 2.6958 -7.3590 -2.1834 17 8 1.4494 -7.7051 -1.5412 18 6 1.6455 -7.4034 -0.1424 19 1 -0.4851 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6043 0.8895 23 1 2.8721 -3.6043 -0.8904 24 1 0.9408 -5.0231 0.8266 25 1 4.0797 -6.9557 0.9355 26 1 4.0868 -5.1759 0.9129 27 1 3.3731 -6.0359 3.0238 28 1 2.8040 -5.1835 -2.0877 29 1 4.2193 -6.0231 -1.3777 30 1 2.5419 -7.2028 -3.2511 31 1 3.4392 -8.1387 -2.0179 32 1 2.2269 -8.1904 0.3377 33 1 0.6847 -7.2814 0.3577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393895901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = -127.574736 kcal Electronic energy + Delta-G solvation = -14961.593450 eV Core-core repulsion = 12406.885234 eV Total energy + Delta-G solvation = -2554.708216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95560 -37.97625 -36.56678 -34.98442 -32.67615 -30.89003 -29.28703 -26.66993 -25.86418 -23.81540 -22.38035 -20.47758 -18.58390 -18.31865 -17.25153 -16.93954 -16.69071 -16.38861 -16.35615 -15.46544 -14.98260 -14.51625 -14.25650 -13.77164 -13.38413 -13.32286 -12.91655 -12.79219 -12.46174 -12.35498 -12.20077 -11.98616 -11.73170 -11.43324 -11.28188 -10.94262 -10.63442 -10.56249 -9.24563 -8.20454 -6.33007 1.39209 1.43096 1.51107 2.39733 2.92336 3.12523 3.17199 3.41244 3.64214 3.91245 4.16359 4.20161 4.33609 4.41128 4.47827 4.54874 4.65774 4.71156 4.83422 4.84804 4.90891 5.05722 5.17941 5.43558 5.66338 5.78232 5.85001 6.13875 6.30365 6.52224 6.83588 6.84809 7.36427 8.91825 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.006665 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.324755 B = 4200.294408 C = 4384.356467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.089 3.911 11 N -0.678 5.678 12 C 0.075 3.925 13 C 0.057 3.943 14 O -0.586 6.586 15 C -0.144 4.144 16 C 0.048 3.952 17 O -0.397 6.397 18 C 0.068 3.932 19 H 0.264 0.736 20 H -0.011 1.011 21 H -0.015 1.015 22 H 0.021 0.979 23 H 0.060 0.940 24 H 0.339 0.661 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.397 0.603 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 -14.508 0.774 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.003 4.003 10 C -0.039 4.039 11 N -0.309 5.309 12 C -0.017 4.017 13 C -0.022 4.022 14 O -0.395 6.395 15 C -0.182 4.182 16 C -0.028 4.028 17 O -0.316 6.316 18 C -0.009 4.009 19 H 0.073 0.927 20 H 0.007 0.993 21 H 0.003 0.997 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.158 0.842 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.247 0.753 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.278 -14.468 -0.393 17.191 hybrid contribution 0.949 1.218 1.365 2.061 sum 10.227 -13.249 0.972 16.765 Atomic orbital electron populations 1.70121 1.07988 1.27903 1.51310 1.26030 0.95764 1.03545 0.94555 0.85444 0.78214 0.77751 0.79271 1.19003 1.20824 1.18985 1.21582 0.93530 0.92156 1.51100 0.91964 1.18879 0.94336 0.92536 0.94574 1.21733 0.95516 0.88092 0.98579 1.60709 1.23517 1.01154 1.45530 1.22546 0.92300 0.92290 0.94514 1.22858 0.94353 1.01064 0.83973 1.86410 1.39108 1.97720 1.16229 1.23042 1.01258 0.99697 0.94246 1.23536 0.86092 0.94806 0.98385 1.89101 1.35802 1.86275 1.20436 1.23381 1.00719 0.93727 0.83080 0.92733 0.99264 0.99659 0.96123 0.92154 0.84248 0.90437 0.93680 0.75288 0.91373 0.88119 0.88437 0.89633 0.89722 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.54 13.29 21.45 0.28 -58.25 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.91 5.28 29.85 0.16 2.07 16 10 C 0.09 3.87 4.81 86.30 0.41 4.29 16 11 N -0.68 -25.84 5.98 -465.15 -2.78 -28.63 16 12 C 0.08 2.16 0.72 4.55 0.00 2.16 16 13 C 0.06 1.34 5.12 71.98 0.37 1.71 16 14 O -0.59 -14.37 12.98 -148.98 -1.93 -16.31 16 15 C -0.14 -3.67 5.82 31.61 0.18 -3.49 16 16 C 0.05 1.08 7.63 72.49 0.55 1.63 16 17 O -0.40 -11.77 11.65 -148.98 -1.74 -13.51 16 18 C 0.07 1.83 6.76 72.48 0.49 2.32 16 19 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 20 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 21 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 22 H 0.02 0.88 6.77 -2.39 -0.02 0.86 16 23 H 0.06 2.55 6.56 -2.39 -0.02 2.53 16 24 H 0.34 13.37 8.26 -89.70 -0.74 12.63 16 25 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 26 H 0.04 1.13 6.85 -2.39 -0.02 1.12 16 27 H 0.40 6.01 9.12 -74.06 -0.68 5.33 16 28 H 0.07 2.13 6.86 -2.38 -0.02 2.11 16 29 H 0.10 1.97 7.73 -2.39 -0.02 1.95 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.81 7.80 -2.39 -0.02 1.79 16 33 H 0.08 2.40 7.96 -2.39 -0.02 2.38 16 Total: -1.00 -70.97 270.04 -1.58 -72.55 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.31 Total: 17.92 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 2.87 Total: -20.51 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -2.50 Total: -86.88 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -3.67 Total: -29.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.97 -1.58 -72.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393895901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.026 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds