Wall clock time and date at job start Mon Mar 30 2020 02:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99889 * 2 1 4 4 H 1.48492 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47224 * 300.00496 * 3 2 1 6 6 H 1.48499 * 109.46682 * 60.00166 * 3 2 1 7 7 C 1.37880 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99417 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47144 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46974 * 65.00051 * 12 11 10 14 14 C 1.46908 * 110.99875 * 180.02562 * 13 12 11 15 15 C 1.53777 * 113.61208 * 155.00128 * 14 13 12 16 16 C 1.53781 * 87.08184 * 140.06263 * 15 14 13 17 17 O 1.42905 * 113.61237 * 89.11276 * 16 15 14 18 18 C 1.53779 * 113.68901 * 252.53608 * 14 13 12 19 19 H 0.96994 * 120.00461 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46992 * 59.99335 * 9 7 2 21 21 H 1.08998 * 109.46550 * 299.99267 * 9 7 2 22 22 H 1.09001 * 109.47292 * 60.00354 * 11 10 9 23 23 H 1.09003 * 109.47706 * 300.00158 * 11 10 9 24 24 H 1.09000 * 109.47559 * 305.00452 * 12 11 10 25 25 H 1.08997 * 109.47672 * 185.00080 * 12 11 10 26 26 H 1.00897 * 110.99887 * 303.95074 * 13 12 11 27 27 H 1.08999 * 112.84901 * 23.80071 * 14 13 12 28 28 H 1.09005 * 113.61435 * 25.51689 * 15 14 13 29 29 H 1.09003 * 113.61452 * 254.61124 * 15 14 13 30 30 H 1.08993 * 113.61848 * 219.93408 * 16 15 14 31 31 H 0.96705 * 113.99788 * 180.02562 * 17 16 15 32 32 H 1.09003 * 113.61721 * 105.45823 * 18 14 13 33 33 H 1.09005 * 113.61708 * 334.55922 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 2.1799 -3.5852 -0.0027 11 6 1.5653 -4.8753 -0.0032 12 6 2.6482 -5.9561 -0.0049 13 7 3.4092 -5.8887 1.2499 14 6 4.4608 -6.9140 1.2835 15 6 5.6403 -6.5566 2.2032 16 6 5.6505 -8.0331 2.6330 17 8 6.4766 -8.8622 1.8131 18 6 4.1622 -8.0738 2.2481 19 1 -0.4850 0.8400 0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6243 -2.5575 0.8881 22 1 0.9449 -4.9819 -0.8931 23 1 0.9454 -4.9830 0.8869 24 1 3.3213 -5.7949 -0.8470 25 1 2.1823 -6.9373 -0.0949 26 1 3.7979 -4.9679 1.3879 27 1 4.7656 -7.2404 0.2892 28 1 5.3748 -5.8698 3.0069 29 1 6.5376 -6.2525 1.6643 30 1 5.8315 -8.1766 3.6981 31 1 6.4868 -9.7921 2.0782 32 1 3.8662 -8.9946 1.7454 33 1 3.4926 -7.8019 3.0641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395451539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:50 Heat of formation + Delta-G solvation = -81.972588 kcal Electronic energy + Delta-G solvation = -14156.214850 eV Core-core repulsion = 11603.484091 eV Total energy + Delta-G solvation = -2552.730759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50602 -37.00224 -35.50236 -33.34391 -32.48137 -28.45043 -26.63531 -25.77846 -23.32415 -22.34013 -21.30679 -19.67698 -17.34436 -16.43431 -15.96129 -15.51625 -15.38657 -15.11372 -14.38334 -14.00049 -13.66641 -13.34300 -12.60259 -12.37241 -12.15641 -12.01127 -11.61771 -11.17561 -10.90219 -10.76588 -10.74861 -10.69202 -10.30879 -10.03896 -9.75895 -9.08420 -8.81933 -8.19569 -8.16040 -6.10350 -4.12066 3.29481 3.35899 3.42257 3.90584 4.35439 4.41158 4.47398 4.69394 4.77899 4.98266 5.12591 5.26208 5.39153 5.55850 5.69221 5.75799 5.78488 5.90562 6.03638 6.09521 6.18472 6.27227 6.40053 7.12571 7.30496 7.44179 7.45154 7.68481 7.79984 8.16176 8.58837 9.01551 9.52889 11.01267 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.049731 B = 0.004908 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.899004 B = 5703.608694 C = 6098.018143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.065 3.935 13 N -0.677 5.677 14 C 0.065 3.935 15 C -0.137 4.137 16 C 0.075 3.925 17 O -0.554 6.554 18 C -0.156 4.156 19 H 0.263 0.737 20 H 0.004 0.996 21 H 0.006 0.994 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.357 0.643 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.378 0.622 32 H 0.065 0.935 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 -15.799 4.308 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.319 6.319 11 C -0.016 4.016 12 C -0.064 4.064 13 N -0.310 5.310 14 C -0.045 4.045 15 C -0.175 4.175 16 C 0.016 3.984 17 O -0.359 6.359 18 C -0.195 4.195 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.024 0.976 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.177 0.823 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.225 0.775 32 H 0.084 0.916 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.819 -15.433 4.338 17.836 hybrid contribution 0.430 0.696 -0.388 0.905 sum 8.249 -14.737 3.950 17.345 Atomic orbital electron populations 1.69973 1.06111 1.27039 1.50652 1.24952 0.94965 0.99434 0.95161 0.86289 0.80001 0.82631 0.77618 1.19508 1.20861 1.20826 1.21100 0.94044 0.89408 1.50681 0.91567 1.20184 0.88724 0.83492 0.95393 1.87786 1.35787 1.13145 1.95230 1.22301 0.94566 0.85271 0.99478 1.21994 0.95886 0.97898 0.90634 1.60626 1.26112 1.08923 1.35324 1.22920 0.90660 0.93665 0.97255 1.23335 0.98894 0.94770 1.00519 1.22627 0.90409 0.92224 0.93184 1.86472 1.68931 1.22860 1.57675 1.23748 0.96459 0.98756 1.00557 0.92712 0.97825 0.97597 0.94210 0.93588 0.94757 0.90823 0.82289 0.90948 0.87977 0.90746 0.91366 0.77461 0.91606 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.46 5.69 36.01 0.20 5.67 16 10 O -0.40 -9.69 9.85 -35.23 -0.35 -10.04 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.07 1.03 5.95 -3.82 -0.02 1.01 16 13 N -0.68 -10.40 6.56 -105.86 -0.69 -11.10 16 14 C 0.07 0.85 4.07 -66.90 -0.27 0.57 16 15 C -0.14 -1.59 7.48 -25.92 -0.19 -1.79 16 16 C 0.08 0.75 5.28 -25.92 -0.14 0.61 16 17 O -0.55 -5.58 13.59 -35.23 -0.48 -6.06 16 18 C -0.16 -1.69 7.71 -25.92 -0.20 -1.89 16 19 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 20 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.03 0.56 8.13 -51.93 -0.42 0.13 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.36 6.03 8.10 -39.29 -0.32 5.71 16 27 H 0.07 0.99 7.87 -51.93 -0.41 0.59 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.38 2.02 9.12 45.56 0.42 2.43 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -32.13 282.26 -6.87 -38.99 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.51 Total: 1.85 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.81 Total: -8.46 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.04 Total: -37.48 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.83 Total: -16.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.13 -6.87 -38.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395451539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.978 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds