Wall clock time and date at job start Mon Mar 30 2020 02:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99889 * 2 1 4 4 H 1.48492 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47224 * 300.00496 * 3 2 1 6 6 H 1.48499 * 109.46682 * 60.00166 * 3 2 1 7 7 C 1.37880 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99417 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47144 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46974 * 65.00051 * 12 11 10 14 14 C 1.46908 * 110.99875 * 180.02562 * 13 12 11 15 15 C 1.53777 * 113.61208 * 155.00128 * 14 13 12 16 16 C 1.53781 * 87.08184 * 140.06263 * 15 14 13 17 17 O 1.42905 * 113.61237 * 89.11276 * 16 15 14 18 18 C 1.53779 * 113.68901 * 252.53608 * 14 13 12 19 19 H 0.96994 * 120.00461 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46992 * 59.99335 * 9 7 2 21 21 H 1.08998 * 109.46550 * 299.99267 * 9 7 2 22 22 H 1.09001 * 109.47292 * 60.00354 * 11 10 9 23 23 H 1.09003 * 109.47706 * 300.00158 * 11 10 9 24 24 H 1.09000 * 109.47559 * 305.00452 * 12 11 10 25 25 H 1.08997 * 109.47672 * 185.00080 * 12 11 10 26 26 H 1.00897 * 110.99887 * 303.95074 * 13 12 11 27 27 H 1.08999 * 112.84901 * 23.80071 * 14 13 12 28 28 H 1.09005 * 113.61435 * 25.51689 * 15 14 13 29 29 H 1.09003 * 113.61452 * 254.61124 * 15 14 13 30 30 H 1.08993 * 113.61848 * 219.93408 * 16 15 14 31 31 H 0.96705 * 113.99788 * 180.02562 * 17 16 15 32 32 H 1.09003 * 113.61721 * 105.45823 * 18 14 13 33 33 H 1.09005 * 113.61708 * 334.55922 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 2.1799 -3.5852 -0.0027 11 6 1.5653 -4.8753 -0.0032 12 6 2.6482 -5.9561 -0.0049 13 7 3.4092 -5.8887 1.2499 14 6 4.4608 -6.9140 1.2835 15 6 5.6403 -6.5566 2.2032 16 6 5.6505 -8.0331 2.6330 17 8 6.4766 -8.8622 1.8131 18 6 4.1622 -8.0738 2.2481 19 1 -0.4850 0.8400 0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6243 -2.5575 0.8881 22 1 0.9449 -4.9819 -0.8931 23 1 0.9454 -4.9830 0.8869 24 1 3.3213 -5.7949 -0.8470 25 1 2.1823 -6.9373 -0.0949 26 1 3.7979 -4.9679 1.3879 27 1 4.7656 -7.2404 0.2892 28 1 5.3748 -5.8698 3.0069 29 1 6.5376 -6.2525 1.6643 30 1 5.8315 -8.1766 3.6981 31 1 6.4868 -9.7921 2.0782 32 1 3.8662 -8.9946 1.7454 33 1 3.4926 -7.8019 3.0641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395451539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:50 Heat of formation + Delta-G solvation = -107.848747 kcal Electronic energy + Delta-G solvation = -14157.336924 eV Core-core repulsion = 11603.484091 eV Total energy + Delta-G solvation = -2553.852833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41635 -38.74785 -36.58636 -35.04139 -34.14491 -30.15454 -28.51968 -26.66927 -24.57383 -24.29430 -22.71195 -20.57052 -18.65459 -18.16699 -17.54917 -16.88903 -16.65974 -16.48020 -16.10956 -15.58252 -15.05666 -14.60341 -14.09137 -13.46847 -13.37993 -13.34321 -13.21254 -12.84076 -12.71867 -12.47410 -12.30399 -11.90468 -11.79722 -11.28367 -11.20973 -10.89146 -10.63089 -10.24621 -9.39367 -8.32876 -6.45469 1.40072 1.41521 1.56190 2.34372 3.01090 3.15786 3.19756 3.27214 3.58777 3.84602 3.87837 4.20741 4.21408 4.37435 4.47815 4.59041 4.75022 4.82326 4.84126 4.88799 4.92993 5.05562 5.16710 5.23184 5.29718 5.54162 5.94734 6.14796 6.37593 6.51948 6.80489 6.92655 7.26633 8.79815 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.049731 B = 0.004908 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.899004 B = 5703.608694 C = 6098.018143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.210 3.790 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.075 3.925 13 N -0.682 5.682 14 C 0.055 3.945 15 C -0.142 4.142 16 C 0.088 3.912 17 O -0.572 6.572 18 C -0.148 4.148 19 H 0.271 0.729 20 H -0.015 1.015 21 H -0.014 1.014 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.029 0.971 25 H 0.101 0.899 26 H 0.344 0.656 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 -16.152 4.797 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.135 3.865 10 O -0.329 6.329 11 C -0.022 4.022 12 C -0.055 4.055 13 N -0.314 5.314 14 C -0.055 4.055 15 C -0.180 4.180 16 C 0.028 3.972 17 O -0.380 6.380 18 C -0.186 4.186 19 H 0.080 0.920 20 H 0.003 0.997 21 H 0.004 0.996 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.119 0.881 26 H 0.163 0.837 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.796 -15.842 4.830 18.753 hybrid contribution 0.102 0.700 -0.554 0.898 sum 8.898 -15.142 4.277 18.077 Atomic orbital electron populations 1.70076 1.07800 1.28626 1.50532 1.25971 0.95951 1.03420 0.93866 0.85116 0.78628 0.77248 0.78280 1.18827 1.19680 1.19600 1.21419 0.94101 0.90817 1.52224 0.91978 1.19815 0.88600 0.84630 0.93453 1.87752 1.35577 1.14364 1.95221 1.22598 0.96006 0.83813 0.99809 1.21947 0.95008 0.97651 0.90872 1.60716 1.27049 1.08794 1.34818 1.23072 0.90834 0.93977 0.97627 1.23374 0.97863 0.96510 1.00262 1.22525 0.89578 0.90822 0.94279 1.86425 1.68785 1.24609 1.58214 1.23686 0.97295 0.97892 0.99752 0.92017 0.99722 0.99606 0.93386 0.93681 0.95229 0.88090 0.83723 0.91787 0.87710 0.91618 0.88985 0.75032 0.90731 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -33.04 9.43 25.60 0.24 -32.79 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.04 5.69 71.24 0.41 12.44 16 10 O -0.41 -20.26 9.85 -148.98 -1.47 -21.73 16 11 C 0.05 2.11 6.28 71.98 0.45 2.56 16 12 C 0.07 2.31 5.95 86.30 0.51 2.82 16 13 N -0.68 -20.65 6.56 -488.85 -3.21 -23.86 16 14 C 0.05 1.36 4.07 45.44 0.19 1.55 16 15 C -0.14 -3.16 7.48 31.12 0.23 -2.93 16 16 C 0.09 1.54 5.28 31.12 0.16 1.71 16 17 O -0.57 -10.20 13.59 -148.98 -2.02 -12.22 16 18 C -0.15 -2.88 7.71 31.12 0.24 -2.64 16 19 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 20 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 21 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.03 0.94 8.13 -2.39 -0.02 0.92 16 25 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.34 11.75 8.10 -89.70 -0.73 11.02 16 27 H 0.06 1.71 7.87 -2.39 -0.02 1.69 16 28 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.40 3.17 9.12 -74.05 -0.68 2.50 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -68.38 282.26 -1.80 -70.18 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.31 Total: 13.59 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 2.90 Total: -16.45 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.92 Total: -80.06 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -3.49 Total: -33.95 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.38 -1.80 -70.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395451539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.665 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds