Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.27543 * 57.91403 * 9 7 2 11 11 C 1.54592 * 110.31227 * 295.71417 * 9 7 2 12 12 C 1.54937 * 102.92511 * 219.12886 * 11 9 7 13 13 N 1.48528 * 103.22430 * 37.41391 * 12 11 9 14 14 C 1.46902 * 110.99801 * 200.27877 * 13 12 11 15 15 C 1.52992 * 109.47425 * 287.39715 * 14 13 12 16 16 H 1.09001 * 109.47328 * 305.00119 * 15 14 13 17 17 O 1.42900 * 109.47325 * 64.99735 * 15 14 13 18 18 C 1.53000 * 109.47304 * 185.00326 * 15 14 13 19 19 O 1.42905 * 109.47047 * 175.00356 * 18 15 14 20 20 C 1.47903 * 105.82094 * 320.79117 * 13 12 11 21 21 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 22 22 H 1.09003 * 110.72507 * 337.49247 * 11 9 7 23 23 H 1.09009 * 110.72516 * 100.76798 * 11 9 7 24 24 H 1.08999 * 110.66436 * 278.97647 * 12 11 9 25 25 H 1.08997 * 110.81049 * 155.91996 * 12 11 9 26 26 H 1.09000 * 109.47337 * 47.40303 * 14 13 12 27 27 H 1.09010 * 109.47123 * 167.39521 * 14 13 12 28 28 H 0.96706 * 113.99469 * 60.00135 * 17 15 14 29 29 H 1.09003 * 109.46521 * 294.99620 * 18 15 14 30 30 H 1.08995 * 109.47524 * 54.99824 * 18 15 14 31 31 H 0.96701 * 113.99939 * 180.02562 * 19 18 15 32 32 H 1.08996 * 109.91819 * 265.97693 * 20 13 12 33 33 H 1.09008 * 109.91522 * 144.68605 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5916 -2.5552 -0.8643 11 6 0.4386 -2.6484 1.3083 12 6 0.6034 -4.1508 1.6492 13 7 2.0065 -4.4367 1.2547 14 6 2.2124 -5.8766 1.0486 15 6 2.2148 -6.5903 2.4019 16 1 2.9605 -6.1333 3.0524 17 8 0.9236 -6.4753 3.0033 18 6 2.5528 -8.0685 2.1983 19 8 2.6694 -8.7100 3.4700 20 6 2.2346 -3.6841 0.0021 21 1 -0.4850 -0.8401 -0.0004 22 1 0.8593 -2.0253 2.0976 23 1 -0.6104 -2.4038 1.1404 24 1 -0.0910 -4.7559 1.0664 25 1 0.4608 -4.3238 2.7159 26 1 1.4079 -6.2738 0.4297 27 1 3.1682 -6.0393 0.5504 28 1 0.2093 -6.8616 2.4782 29 1 1.7606 -8.5462 1.6217 30 1 3.4966 -8.1547 1.6600 31 1 2.8835 -9.6516 3.4174 32 1 2.0424 -4.3264 -0.8573 33 1 3.2600 -3.3156 -0.0283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = -104.287286 kcal Electronic energy + Delta-G solvation = -14926.210910 eV Core-core repulsion = 12372.512513 eV Total energy + Delta-G solvation = -2553.698397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94779 -37.37823 -35.76877 -33.40504 -31.20809 -28.83042 -28.19788 -24.91314 -23.62930 -21.60744 -20.34133 -19.60449 -17.53496 -16.88311 -16.54603 -16.13345 -14.90730 -14.83049 -14.06060 -13.70498 -13.37166 -13.02893 -12.82812 -12.53566 -12.02379 -11.56936 -11.21220 -10.92884 -10.77585 -10.64587 -10.45335 -10.27711 -10.06797 -9.91904 -9.60497 -9.50845 -8.41497 -8.30085 -7.81666 -6.28572 -3.99496 3.46718 3.51297 3.66815 3.80640 4.45371 4.58062 4.66106 4.94938 5.06014 5.23780 5.24418 5.36019 5.44307 5.65956 5.74422 5.98556 6.07101 6.19146 6.20537 6.55830 6.72067 6.90578 7.08270 7.28072 7.36477 7.39771 7.66699 7.73616 7.81564 8.29051 8.49233 8.94136 9.71469 11.09744 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.068894 B = 0.006177 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.323756 B = 4531.730646 C = 4667.723816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.587 4.587 8 H 0.050 0.950 9 C 0.024 3.976 10 H 0.019 0.981 11 C -0.113 4.113 12 C 0.038 3.962 13 N -0.509 5.509 14 C 0.018 3.982 15 C 0.114 3.886 16 H 0.112 0.888 17 O -0.545 6.545 18 C 0.046 3.954 19 O -0.563 6.563 20 C 0.051 3.949 21 H 0.270 0.730 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.365 0.635 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.375 0.625 32 H 0.018 0.982 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -15.083 1.799 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.186 4.186 3 Si 0.899 3.101 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.625 4.625 8 H 0.069 0.931 9 C 0.005 3.995 10 H 0.037 0.963 11 C -0.151 4.151 12 C -0.089 4.089 13 N -0.233 5.233 14 C -0.111 4.111 15 C 0.054 3.946 16 H 0.129 0.871 17 O -0.349 6.349 18 C -0.033 4.033 19 O -0.368 6.368 20 C -0.076 4.076 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.211 0.789 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.221 0.779 32 H 0.036 0.964 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.664 -12.365 2.876 13.213 hybrid contribution -0.459 -2.936 -1.506 3.331 sum 3.205 -15.301 1.370 15.693 Atomic orbital electron populations 1.70768 1.06853 1.30864 1.46659 1.25786 0.96568 1.02530 0.93739 0.83525 0.74765 0.75220 0.76593 1.21626 1.21483 1.21085 1.22015 0.93947 0.91137 1.55405 0.93146 1.19644 0.93109 0.93657 0.93054 0.96319 1.22723 0.99253 0.92712 1.00443 1.23376 0.87420 0.97570 1.00561 1.64681 1.24127 1.04173 1.30357 1.22827 1.01241 0.91361 0.95687 1.21940 0.86536 0.91149 0.94942 0.87051 1.86696 1.16101 1.82379 1.49748 1.22940 1.00028 0.94885 0.85461 1.86582 1.94110 1.26813 1.29274 1.22989 1.01816 0.94921 0.87894 0.91802 0.91391 0.93051 0.95803 0.89856 0.94970 0.90450 0.78866 0.93648 0.92788 0.77875 0.96365 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.45 55.43 0.75 -26.92 16 2 C 0.02 0.51 5.34 -17.82 -0.10 0.41 16 3 Si 1.07 25.56 29.90 -169.99 -5.08 20.47 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.59 -16.64 8.38 -34.44 -0.29 -16.93 16 8 H 0.05 1.43 7.34 -52.49 -0.39 1.05 16 9 C 0.02 0.62 2.54 -90.42 -0.23 0.39 16 10 H 0.02 0.51 7.95 -51.93 -0.41 0.09 16 11 C -0.11 -2.68 5.57 -24.87 -0.14 -2.82 16 12 C 0.04 0.75 5.33 -1.90 -0.01 0.74 16 13 N -0.51 -9.91 5.24 -230.46 -1.21 -11.11 16 14 C 0.02 0.27 4.52 -3.83 -0.02 0.25 16 15 C 0.11 1.57 3.46 -26.73 -0.09 1.47 16 16 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 17 O -0.55 -8.05 10.67 -40.08 -0.43 -8.48 16 18 C 0.05 0.47 6.68 37.16 0.25 0.72 16 19 O -0.56 -6.34 13.62 -40.08 -0.55 -6.88 16 20 C 0.05 1.10 6.31 -2.75 -0.02 1.08 16 21 H 0.27 8.08 5.65 -40.82 -0.23 7.85 16 22 H 0.07 1.78 7.86 -51.93 -0.41 1.37 16 23 H 0.05 1.23 7.10 -51.92 -0.37 0.86 16 24 H 0.02 0.43 7.81 -51.93 -0.41 0.03 16 25 H 0.08 1.63 6.79 -51.93 -0.35 1.27 16 26 H 0.03 0.45 7.83 -51.93 -0.41 0.04 16 27 H 0.08 1.05 8.08 -51.92 -0.42 0.63 16 28 H 0.37 4.13 9.05 45.56 0.41 4.54 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.38 2.26 9.12 45.56 0.42 2.67 16 32 H 0.02 0.36 7.77 -51.93 -0.40 -0.04 16 33 H 0.07 1.64 7.39 -51.92 -0.38 1.26 16 LS Contribution 266.50 15.07 4.02 4.02 Total: -1.00 -32.92 266.50 -6.56 -39.48 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.41 Total: 4.10 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.64 Total: -14.67 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.46 Total: -38.03 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.97 Total: -15.36 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.92 -6.56 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.811 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds