Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99939 * 2 1 4 4 C 1.53003 * 109.46979 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47175 * 180.02562 * 4 3 2 6 6 C 1.48813 * 111.18681 * 52.66416 * 5 4 3 7 7 C 1.54933 * 103.35205 * 159.50572 * 6 5 4 8 8 C 1.54594 * 102.91997 * 322.69117 * 7 6 5 9 9 H 1.09005 * 110.30718 * 263.04287 * 8 7 6 10 10 C 1.50700 * 110.39549 * 140.91819 * 8 7 6 11 11 H 1.07993 * 120.00127 * 244.23462 * 10 8 7 12 12 C 1.37877 * 119.99781 * 64.23084 * 10 8 7 13 13 N 1.31511 * 120.00137 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99819 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47054 * 89.99646 * 14 12 10 16 16 H 1.48497 * 109.47061 * 209.99780 * 14 12 10 17 17 H 1.48501 * 109.47018 * 330.00222 * 14 12 10 18 18 C 1.47905 * 111.00050 * 169.99751 * 5 4 3 19 19 H 1.08994 * 109.47370 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46833 * 299.99841 * 1 2 3 21 21 H 1.08999 * 109.47225 * 59.99730 * 1 2 3 22 22 H 1.09000 * 109.47147 * 60.00633 * 3 2 1 23 23 H 1.08995 * 109.47473 * 300.00143 * 3 2 1 24 24 H 1.09000 * 109.47560 * 59.99864 * 4 3 2 25 25 H 1.09011 * 109.47014 * 299.99966 * 4 3 2 26 26 H 1.08998 * 110.51915 * 41.07024 * 6 5 4 27 27 H 1.09009 * 110.83927 * 278.09443 * 6 5 4 28 28 H 1.08999 * 110.72416 * 204.32980 * 7 6 5 29 29 H 1.08998 * 110.87653 * 81.12010 * 7 6 5 30 30 H 0.97007 * 120.00051 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.91668 * 94.80258 * 18 5 4 32 32 H 1.09002 * 109.91761 * 333.70433 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 7 4.0728 3.3712 0.0000 6 6 3.3744 4.0840 1.1039 7 6 4.2131 5.3742 1.2838 8 6 5.6600 4.8809 1.0534 9 1 6.1469 4.6779 2.0073 10 6 6.4455 5.9034 0.2733 11 1 6.8149 5.6632 -0.7127 12 6 6.6926 7.1454 0.8185 13 7 6.2432 7.4377 2.0194 14 14 7.6658 8.4131 -0.1488 15 1 6.7357 9.2320 -0.9672 16 1 8.4038 9.2938 0.7919 17 1 8.6313 7.7213 -1.0401 18 6 5.5172 3.5816 0.2392 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8032 2.2371 0.8900 23 1 1.8032 2.2371 -0.8899 24 1 4.1610 1.4704 -0.8908 25 1 4.1617 1.4702 0.8892 26 1 3.3892 3.4854 2.0147 27 1 2.3500 4.3272 0.8216 28 1 4.0971 5.7722 2.2919 29 1 3.9380 6.1230 0.5410 30 1 6.4174 8.3115 2.4031 31 1 6.0406 3.6800 -0.7118 32 1 5.9262 2.7432 0.8031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397631929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -6.196808 kcal Electronic energy + Delta-G solvation = -12546.750801 eV Core-core repulsion = 10440.058797 eV Total energy + Delta-G solvation = -2106.692003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.18660 -33.72864 -31.67709 -29.19113 -28.37861 -28.12388 -24.24865 -22.63560 -19.90125 -19.39956 -16.55217 -16.18292 -15.34865 -15.07425 -14.44597 -14.19427 -13.74149 -13.48273 -12.99796 -12.74854 -12.31971 -12.19715 -11.50588 -11.12996 -10.94891 -10.83301 -10.65717 -10.53099 -10.20873 -10.06175 -9.67082 -9.28414 -8.78411 -8.39251 -7.79068 -7.72744 -6.00159 -4.01953 1.59905 2.53838 3.32879 3.39322 3.42897 4.45936 4.70504 4.94744 4.98077 5.00743 5.10080 5.33563 5.52175 5.61602 5.77209 5.88297 6.00064 6.10816 6.21538 6.28617 6.53793 6.86918 7.11813 7.17459 7.42130 7.64026 7.73079 7.90516 8.02247 8.44983 8.99540 9.61513 11.10010 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.082895 B = 0.005574 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.694204 B = 5021.869333 C = 5147.367972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.273 6.273 3 C -0.078 4.078 4 C 0.063 3.937 5 N -0.513 5.513 6 C 0.026 3.974 7 C -0.092 4.092 8 C 0.040 3.960 9 H 0.031 0.969 10 C -0.507 4.507 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.045 3.955 19 H 0.098 0.902 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.259 0.741 31 H 0.073 0.927 32 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 -10.503 -2.236 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.049 6.049 3 C -0.226 4.226 4 C -0.066 4.066 5 N -0.238 5.238 6 C -0.101 4.101 7 C -0.131 4.131 8 C 0.021 3.979 9 H 0.049 0.951 10 C -0.546 4.546 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.082 4.082 19 H 0.117 0.883 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.881 -11.036 -2.616 14.405 hybrid contribution -0.172 1.413 0.346 1.465 sum -9.053 -9.623 -2.270 13.405 Atomic orbital electron populations 1.23334 0.94262 1.06205 1.04907 1.86793 1.07247 1.12719 1.98124 1.23493 1.00937 0.92657 1.05517 1.21947 0.91779 0.91445 1.01429 1.64933 1.08001 1.07118 1.43772 1.23425 0.98143 0.97157 0.91425 1.22405 0.95996 0.93790 1.00883 1.19498 0.93124 0.90368 0.94912 0.95132 1.21181 1.33618 0.97744 1.02024 0.92424 1.24980 0.95830 0.98347 0.94907 1.69968 1.46055 1.21788 1.15258 0.86606 0.80182 0.81478 0.79804 1.20710 1.21353 1.19910 1.23124 0.86235 0.98487 1.00400 0.88287 0.90585 0.90528 0.89938 0.89319 0.90388 0.94413 0.95153 0.91920 0.92236 0.91942 0.93106 0.90914 0.95984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.76 101.05 1.09 0.03 16 2 S -0.27 -3.44 22.38 -107.50 -2.41 -5.85 16 3 C -0.08 -1.06 5.61 37.16 0.21 -0.85 16 4 C 0.06 1.02 5.04 -3.82 -0.02 1.00 16 5 N -0.51 -9.89 5.40 -230.20 -1.24 -11.14 16 6 C 0.03 0.50 5.12 -1.74 -0.01 0.49 16 7 C -0.09 -2.15 5.76 -24.87 -0.14 -2.29 16 8 C 0.04 1.00 2.86 -90.42 -0.26 0.74 16 9 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.51 -13.97 8.38 -34.44 -0.29 -14.26 16 11 H 0.06 1.58 7.34 -52.49 -0.39 1.19 16 12 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 13 N -0.89 -25.63 12.63 55.43 0.70 -24.93 16 14 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 18 C 0.04 0.96 6.34 -2.75 -0.02 0.95 16 19 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 21 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 22 H 0.08 1.11 6.81 -51.92 -0.35 0.76 16 23 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.04 0.62 7.81 -51.92 -0.41 0.22 16 26 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 27 H 0.06 1.09 7.69 -51.92 -0.40 0.69 16 28 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16 29 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.07 1.60 7.39 -51.93 -0.38 1.21 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -28.33 272.23 -8.64 -36.97 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.24 Total: -2.91 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 0.46 Total: -12.60 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.54 Total: -36.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.41 Total: -5.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.33 -8.64 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.777 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds