Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99939 * 2 1 4 4 C 1.53003 * 109.46979 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47175 * 180.02562 * 4 3 2 6 6 C 1.48813 * 111.18681 * 52.66416 * 5 4 3 7 7 C 1.54933 * 103.35205 * 159.50572 * 6 5 4 8 8 C 1.54594 * 102.91997 * 322.69117 * 7 6 5 9 9 H 1.09005 * 110.30718 * 263.04287 * 8 7 6 10 10 C 1.50700 * 110.39549 * 140.91819 * 8 7 6 11 11 H 1.07993 * 120.00127 * 244.23462 * 10 8 7 12 12 C 1.37877 * 119.99781 * 64.23084 * 10 8 7 13 13 N 1.31511 * 120.00137 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99819 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47054 * 89.99646 * 14 12 10 16 16 H 1.48497 * 109.47061 * 209.99780 * 14 12 10 17 17 H 1.48501 * 109.47018 * 330.00222 * 14 12 10 18 18 C 1.47905 * 111.00050 * 169.99751 * 5 4 3 19 19 H 1.08994 * 109.47370 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46833 * 299.99841 * 1 2 3 21 21 H 1.08999 * 109.47225 * 59.99730 * 1 2 3 22 22 H 1.09000 * 109.47147 * 60.00633 * 3 2 1 23 23 H 1.08995 * 109.47473 * 300.00143 * 3 2 1 24 24 H 1.09000 * 109.47560 * 59.99864 * 4 3 2 25 25 H 1.09011 * 109.47014 * 299.99966 * 4 3 2 26 26 H 1.08998 * 110.51915 * 41.07024 * 6 5 4 27 27 H 1.09009 * 110.83927 * 278.09443 * 6 5 4 28 28 H 1.08999 * 110.72416 * 204.32980 * 7 6 5 29 29 H 1.08998 * 110.87653 * 81.12010 * 7 6 5 30 30 H 0.97007 * 120.00051 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.91668 * 94.80258 * 18 5 4 32 32 H 1.09002 * 109.91761 * 333.70433 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 7 4.0728 3.3712 0.0000 6 6 3.3744 4.0840 1.1039 7 6 4.2131 5.3742 1.2838 8 6 5.6600 4.8809 1.0534 9 1 6.1469 4.6779 2.0073 10 6 6.4455 5.9034 0.2733 11 1 6.8149 5.6632 -0.7127 12 6 6.6926 7.1454 0.8185 13 7 6.2432 7.4377 2.0194 14 14 7.6658 8.4131 -0.1488 15 1 6.7357 9.2320 -0.9672 16 1 8.4038 9.2938 0.7919 17 1 8.6313 7.7213 -1.0401 18 6 5.5172 3.5816 0.2392 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8032 2.2371 0.8900 23 1 1.8032 2.2371 -0.8899 24 1 4.1610 1.4704 -0.8908 25 1 4.1617 1.4702 0.8892 26 1 3.3892 3.4854 2.0147 27 1 2.3500 4.3272 0.8216 28 1 4.0971 5.7722 2.2919 29 1 3.9380 6.1230 0.5410 30 1 6.4174 8.3115 2.4031 31 1 6.0406 3.6800 -0.7118 32 1 5.9262 2.7432 0.8031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397631929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -23.723472 kcal Electronic energy + Delta-G solvation = -12547.510814 eV Core-core repulsion = 10440.058797 eV Total energy + Delta-G solvation = -2107.452017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82830 -35.53084 -33.45680 -30.22142 -29.97398 -29.55419 -26.22252 -24.07008 -21.44119 -21.30502 -18.59159 -17.31138 -16.86218 -16.44419 -16.30733 -15.63394 -14.84396 -14.48922 -14.36921 -14.04386 -13.87186 -13.74874 -13.06773 -12.93253 -12.64518 -12.57560 -12.29016 -12.16447 -11.94979 -11.59955 -11.20386 -10.98196 -10.83314 -10.49501 -9.31704 -8.70877 -8.12902 -6.21564 0.66997 1.42612 1.43195 1.53558 1.65314 2.44436 3.16725 3.23055 3.75385 3.93509 4.11509 4.34538 4.35211 4.37302 4.45399 4.47840 4.53304 4.77646 4.80661 4.89429 4.89847 5.02284 5.22237 5.33584 5.53533 5.70610 5.84181 6.10689 6.19477 6.37184 6.86557 7.45305 8.96816 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.082895 B = 0.005574 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.694204 B = 5021.869333 C = 5147.367972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.306 6.306 3 C -0.068 4.068 4 C 0.067 3.933 5 N -0.519 5.519 6 C 0.041 3.959 7 C -0.086 4.086 8 C 0.030 3.970 9 H 0.001 0.999 10 C -0.526 4.526 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.268 1.268 18 C 0.055 3.945 19 H 0.115 0.885 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.065 0.935 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 -11.247 -3.021 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.082 6.082 3 C -0.217 4.217 4 C -0.062 4.062 5 N -0.244 5.244 6 C -0.087 4.087 7 C -0.124 4.124 8 C 0.011 3.989 9 H 0.019 0.981 10 C -0.565 4.565 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.560 5.560 14 Si 0.781 3.219 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.073 4.073 19 H 0.134 0.866 20 H 0.103 0.897 21 H 0.105 0.895 22 H 0.104 0.896 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.032 -11.794 -3.408 15.854 hybrid contribution 0.146 1.581 0.607 1.700 sum -9.886 -10.213 -2.802 14.487 Atomic orbital electron populations 1.23431 0.90588 1.07651 1.05903 1.86918 1.11296 1.11759 1.98223 1.23309 0.98894 0.93613 1.05842 1.21950 0.93787 0.89035 1.01468 1.64880 1.06368 1.09519 1.43671 1.23298 0.98433 0.94845 0.92091 1.22175 0.96000 0.95311 0.98958 1.19490 0.93625 0.91946 0.93847 0.98121 1.21516 1.34071 0.98710 1.02155 0.92772 1.25749 0.96811 1.00271 0.95825 1.70084 1.47086 1.22264 1.16597 0.85596 0.78869 0.78938 0.78506 1.20166 1.20945 1.19227 1.22871 0.88061 0.96949 0.99413 0.86597 0.89652 0.89480 0.89583 0.88942 0.90030 0.94666 0.94061 0.89394 0.94032 0.94231 0.93064 0.91645 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.76 113.37 1.22 -0.35 16 2 S -0.31 -7.02 22.38 -56.49 -1.26 -8.28 16 3 C -0.07 -1.70 5.61 71.98 0.40 -1.29 16 4 C 0.07 2.01 5.04 86.30 0.43 2.45 16 5 N -0.52 -19.34 5.40 -882.21 -4.77 -24.10 16 6 C 0.04 1.50 5.12 86.59 0.44 1.95 16 7 C -0.09 -4.06 5.76 31.80 0.18 -3.88 16 8 C 0.03 1.54 2.86 -10.66 -0.03 1.50 16 9 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 10 C -0.53 -29.46 8.38 25.60 0.21 -29.25 16 11 H 0.05 2.99 7.34 -2.91 -0.02 2.97 16 12 C 0.01 0.68 5.34 84.66 0.45 1.13 16 13 N -0.92 -53.88 12.63 21.45 0.27 -53.61 16 14 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 C 0.05 2.35 6.34 86.44 0.55 2.90 16 19 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.09 2.07 6.81 -2.39 -0.02 2.06 16 23 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 24 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.04 1.10 7.81 -2.38 -0.02 1.08 16 26 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 27 H 0.09 2.83 7.69 -2.38 -0.02 2.81 16 28 H 0.04 2.07 8.12 -2.39 -0.02 2.05 16 29 H 0.04 2.01 7.86 -2.39 -0.02 1.99 16 30 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 31 H 0.07 2.87 7.39 -2.39 -0.02 2.86 16 32 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 Total: -1.00 -60.68 272.23 1.20 -59.48 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.07 Total: 5.26 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 3.87 Total: -24.85 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -4.50 Total: -77.72 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -7.02 SS G_CDS: -1.26 Total: -8.28 kcal Total: -60.68 1.20 -59.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.756 kcal (2) G-P(sol) polarization free energy of solvation -60.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds