Wall clock time and date at job start Mon Mar 30 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48495 * 109.47323 * 269.99985 * 3 2 1 5 5 H 1.48500 * 109.47094 * 30.00005 * 3 2 1 6 6 H 1.48505 * 109.47106 * 150.00069 * 3 2 1 7 7 C 1.37876 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00336 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99938 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 O 1.42906 * 110.45795 * 298.85126 * 13 12 11 15 15 C 1.54506 * 110.51553 * 176.09663 * 13 12 11 16 16 C 1.54477 * 104.06707 * 241.35742 * 15 13 12 17 17 O 1.44434 * 104.79966 * 336.01922 * 16 15 13 18 18 C 1.44421 * 105.27293 * 40.51367 * 17 16 15 19 19 H 0.97003 * 119.99678 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47061 * 60.00581 * 9 7 2 21 21 H 1.08995 * 109.47155 * 299.99819 * 9 7 2 22 22 H 1.00899 * 110.99995 * 303.95651 * 10 9 7 23 23 H 1.09001 * 109.46874 * 60.00179 * 11 10 9 24 24 H 1.08992 * 109.47407 * 300.00197 * 11 10 9 25 25 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 26 26 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 27 27 H 0.96697 * 114.00070 * 179.97438 * 14 13 12 28 28 H 1.09004 * 110.51026 * 0.02562 * 15 13 12 29 29 H 1.09001 * 110.51389 * 122.70934 * 15 13 12 30 30 H 1.08997 * 110.37246 * 217.18899 * 16 15 13 31 31 H 1.08995 * 110.46731 * 94.89629 * 16 15 13 32 32 H 1.09002 * 110.36642 * 200.65909 * 18 17 16 33 33 H 1.09000 * 110.46833 * 78.36617 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 5.4697 -2.6183 -0.0009 12 6 5.9409 -4.0739 -0.0002 13 6 7.4704 -4.1148 0.0005 14 8 7.9875 -3.4827 -1.1722 15 6 7.9730 -5.5724 0.0998 16 6 8.7762 -5.6036 1.4190 17 8 9.1769 -4.2336 1.6394 18 6 8.0294 -3.4376 1.2715 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6805 0.8889 21 1 3.8745 -0.6801 -0.8911 22 1 3.6260 -3.0952 0.7806 23 1 5.8465 -2.1143 0.8891 24 1 5.8467 -2.1144 -0.8908 25 1 5.5640 -4.5774 0.8900 26 1 5.5641 -4.5783 -0.8899 27 1 8.9531 -3.4794 -1.2239 28 1 7.1319 -6.2641 0.1480 29 1 8.6178 -5.8126 -0.7456 30 1 9.6526 -6.2432 1.3147 31 1 8.1486 -5.9520 2.2392 32 1 8.3321 -2.4134 1.0538 33 1 7.2849 -3.4515 2.0675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404219772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:21 Heat of formation + Delta-G solvation = -128.706130 kcal Electronic energy + Delta-G solvation = -14591.702386 eV Core-core repulsion = 12036.945109 eV Total energy + Delta-G solvation = -2554.757277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04890 -37.70670 -36.81567 -34.76422 -33.13849 -31.35871 -29.46181 -27.43488 -24.53745 -23.33971 -22.67886 -21.32708 -18.97684 -18.36304 -17.26754 -16.93574 -16.70581 -16.02001 -15.65669 -15.53042 -15.00928 -14.70393 -14.35952 -14.23507 -13.90180 -13.51423 -12.98394 -12.59483 -12.49541 -12.41844 -12.22939 -12.10055 -11.83070 -11.57927 -11.46259 -11.18334 -10.82608 -10.54353 -9.17231 -8.32062 -6.36858 1.34185 1.35248 1.46417 2.32612 2.89651 3.01849 3.23908 3.36324 3.56098 3.70915 4.01878 4.09486 4.20492 4.29601 4.40383 4.57641 4.68228 4.75631 4.76118 4.80394 4.95565 5.01079 5.05698 5.16578 5.20604 5.50089 5.72967 5.92862 6.53273 6.63933 6.75181 6.80170 7.28453 8.84611 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.005574 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.195872 B = 5022.113836 C = 5169.124115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.531 4.531 8 H 0.039 0.961 9 C 0.174 3.826 10 N -0.692 5.692 11 C 0.062 3.938 12 C -0.091 4.091 13 C 0.108 3.892 14 O -0.564 6.564 15 C -0.177 4.177 16 C 0.039 3.961 17 O -0.394 6.394 18 C 0.016 3.984 19 H 0.268 0.732 20 H -0.012 1.012 21 H 0.020 0.980 22 H 0.338 0.662 23 H 0.026 0.974 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.390 0.610 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.091 -9.729 2.568 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.323 5.323 11 C -0.068 4.068 12 C -0.129 4.129 13 C 0.066 3.934 14 O -0.372 6.372 15 C -0.215 4.215 16 C -0.037 4.037 17 O -0.313 6.313 18 C -0.061 4.061 19 H 0.077 0.923 20 H 0.005 0.995 21 H 0.038 0.962 22 H 0.156 0.844 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.470 -9.529 1.841 21.755 hybrid contribution 0.278 0.912 0.853 1.279 sum 19.748 -8.617 2.694 21.714 Atomic orbital electron populations 1.70049 1.08116 1.28294 1.52177 1.25873 0.95658 1.03279 0.94042 0.85662 0.79263 0.78420 0.79262 1.19140 1.20306 1.17608 1.21346 0.91303 0.93575 1.50667 0.94261 1.19744 0.93807 0.87298 0.94610 1.60361 1.07315 1.14736 1.49853 1.21921 0.87622 0.97308 0.99907 1.21493 0.91505 0.96187 1.03696 1.22509 0.93808 0.91855 0.85206 1.86579 1.27411 1.80880 1.42307 1.23652 1.01866 0.96347 0.99612 1.23634 1.00312 0.83694 0.96101 1.89129 1.35884 1.18225 1.88089 1.24248 0.88876 0.96537 0.96422 0.92256 0.99463 0.96222 0.84430 0.95587 0.92246 0.89096 0.90889 0.75993 0.88442 0.88779 0.87066 0.91174 0.88502 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.25 -11.18 6.54 99.48 0.65 -10.52 16 7 C -0.53 -31.52 9.87 25.60 0.25 -31.26 16 8 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 9 C 0.17 8.62 4.51 85.56 0.39 9.01 16 10 N -0.69 -28.98 6.49 -517.92 -3.36 -32.35 16 11 C 0.06 2.05 5.35 86.30 0.46 2.51 16 12 C -0.09 -2.32 4.46 30.59 0.14 -2.18 16 13 C 0.11 2.26 1.11 -9.78 -0.01 2.25 16 14 O -0.56 -12.81 12.46 -148.98 -1.86 -14.66 16 15 C -0.18 -2.72 6.51 31.61 0.21 -2.51 16 16 C 0.04 0.57 7.63 72.48 0.55 1.13 16 17 O -0.39 -8.29 11.65 -148.98 -1.74 -10.03 16 18 C 0.02 0.34 5.86 72.49 0.42 0.76 16 19 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 20 H -0.01 -0.59 7.20 -2.38 -0.02 -0.61 16 21 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 22 H 0.34 13.46 8.72 -89.69 -0.78 12.68 16 23 H 0.03 0.82 7.20 -2.39 -0.02 0.80 16 24 H 0.06 2.15 7.76 -2.39 -0.02 2.13 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.39 5.94 9.04 -74.06 -0.67 5.27 16 28 H 0.10 1.35 7.73 -2.38 -0.02 1.33 16 29 H 0.09 1.28 8.00 -2.39 -0.02 1.26 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 33 H 0.07 1.50 7.71 -2.39 -0.02 1.48 16 Total: -1.00 -69.75 271.52 -2.30 -72.05 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.41 Total: 17.03 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 2.87 Total: -19.29 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.06 Total: -91.85 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -3.59 Total: -24.69 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -69.75 -2.30 -72.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404219772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.657 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds