Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 103.00453 * 2 1 4 4 H 1.09000 * 112.84585 * 316.20067 * 3 2 1 5 5 C 1.53787 * 113.68729 * 87.46320 * 3 2 1 6 6 C 1.53786 * 87.07670 * 139.99709 * 5 3 2 7 7 C 1.53779 * 113.61511 * 185.00237 * 3 2 1 8 8 H 1.09000 * 113.61095 * 105.30877 * 7 3 2 9 9 N 1.46894 * 113.61615 * 334.48219 * 7 3 2 10 10 C 1.46898 * 110.99937 * 154.99942 * 9 7 3 11 11 C 1.53005 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 H 1.08998 * 109.47518 * 59.99386 * 1 2 3 21 21 H 1.08997 * 109.47551 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46479 * 300.00002 * 1 2 3 23 23 H 1.08997 * 113.61520 * 254.54426 * 5 3 2 24 24 H 1.08994 * 113.61186 * 25.36673 * 5 3 2 25 25 H 1.08999 * 113.61137 * 220.02054 * 6 5 3 26 26 H 1.08992 * 113.61665 * 89.12013 * 6 5 3 27 27 H 1.00909 * 110.99725 * 31.04933 * 9 7 3 28 28 H 1.09002 * 109.47032 * 60.00278 * 10 9 7 29 29 H 1.09001 * 109.47520 * 300.00127 * 10 9 7 30 30 H 1.09002 * 109.46935 * 60.00090 * 11 10 9 31 31 H 1.08998 * 109.47061 * 300.00883 * 11 10 9 32 32 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.6110 2.3430 -0.6952 5 6 2.3005 2.3835 1.4069 6 6 3.5203 3.1752 0.9067 7 6 3.7285 2.0518 -0.1229 8 1 4.0261 2.4106 -1.1082 9 7 4.5760 0.9558 0.3653 10 6 5.8960 0.9843 -0.2785 11 6 6.7481 -0.1698 0.2536 12 6 8.1025 -0.1401 -0.4064 13 1 8.3328 0.6255 -1.1325 14 6 9.0477 -1.0905 -0.0833 15 7 8.7671 -2.0231 0.8005 16 14 10.7268 -1.0535 -0.9009 17 1 11.3969 0.2366 -0.5974 18 1 10.5651 -1.1935 -2.3704 19 1 11.5537 -2.1736 -0.3845 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 1.4452 3.0112 1.6570 24 1 2.5376 1.6606 2.1874 25 1 4.3233 3.2494 1.6401 26 1 3.2642 4.1355 0.4594 27 1 4.1263 0.0628 0.2290 28 1 6.3878 1.9316 -0.0572 29 1 5.7767 0.8801 -1.3570 30 1 6.2561 -1.1168 0.0320 31 1 6.8674 -0.0661 1.3321 32 1 7.8953 -2.0422 1.2253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591837201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -14.296979 kcal Electronic energy + Delta-G solvation = -12358.027738 eV Core-core repulsion = 10250.984485 eV Total energy + Delta-G solvation = -2107.043253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14577 -36.59612 -34.55102 -30.57466 -29.72041 -26.83491 -26.24852 -24.89798 -22.88978 -20.28517 -18.88671 -17.75185 -17.09849 -16.55771 -15.67401 -15.59433 -15.22586 -14.84265 -14.50998 -14.29068 -14.01951 -13.44294 -13.39638 -13.11939 -12.84930 -12.36516 -12.06348 -11.99294 -11.83480 -11.69508 -11.27348 -10.78479 -10.70433 -10.56278 -9.43835 -8.73365 -8.71253 -6.42271 0.69347 1.52542 1.62013 1.62819 1.81499 2.56409 3.07819 3.14690 3.42089 3.60568 3.85094 4.05518 4.32072 4.32607 4.33943 4.35040 4.46515 4.62440 4.82975 4.84698 4.86486 5.07918 5.11555 5.17565 5.36651 5.38330 5.87546 6.11468 6.16010 6.33062 6.55005 7.41275 8.69340 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048358 B = 0.005929 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.880109 B = 4721.097928 C = 5053.042167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.326 6.326 3 C -0.072 4.072 4 H 0.130 0.870 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.070 3.930 8 H 0.061 0.939 9 N -0.675 5.675 10 C 0.092 3.908 11 C 0.017 3.983 12 C -0.622 4.622 13 H 0.053 0.947 14 C -0.039 4.039 15 N -0.936 5.936 16 Si 1.122 2.878 17 H -0.267 1.267 18 H -0.268 1.268 19 H -0.282 1.282 20 H 0.088 0.912 21 H 0.106 0.894 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.340 0.660 28 H 0.063 0.937 29 H 0.016 0.984 30 H -0.018 1.018 31 H -0.008 1.008 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.773 9.982 -2.264 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 S -0.099 6.099 3 C -0.201 4.201 4 H 0.148 0.852 5 C -0.146 4.146 6 C -0.164 4.164 7 C -0.042 4.042 8 H 0.079 0.921 9 N -0.309 5.309 10 C -0.037 4.037 11 C -0.020 4.020 12 C -0.660 4.660 13 H 0.072 0.928 14 C -0.236 4.236 15 N -0.573 5.573 16 Si 0.942 3.058 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.208 1.208 20 H 0.107 0.893 21 H 0.125 0.875 22 H 0.108 0.892 23 H 0.113 0.887 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.128 0.872 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.001 0.999 31 H 0.010 0.990 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.479 8.646 -1.794 16.960 hybrid contribution -2.494 1.015 -0.668 2.774 sum -16.973 9.661 -2.462 19.685 Atomic orbital electron populations 1.23392 0.90520 1.07241 1.05960 1.87294 1.11538 1.13215 1.97843 1.25151 0.99195 0.92788 1.03001 0.85206 1.22999 0.98831 0.98816 0.93993 1.22996 0.98367 0.96827 0.98190 1.22685 0.89799 0.93929 0.97761 0.92089 1.60530 1.03267 1.06644 1.60471 1.21706 0.88576 0.98990 0.94429 1.19078 0.94665 0.93123 0.95178 1.22412 1.00202 1.16324 1.27038 0.92848 1.27566 1.08215 0.91967 0.95884 1.70906 1.24289 1.34845 1.27233 0.82888 0.70304 0.76999 0.75566 1.19156 1.19303 1.20756 0.89283 0.87527 0.89231 0.88735 0.90560 0.91666 0.87179 0.83801 0.91873 0.96553 0.99933 0.99008 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 10.76 113.37 1.22 -0.48 16 2 S -0.33 -8.82 19.99 -56.49 -1.13 -9.95 16 3 C -0.07 -1.68 4.24 31.12 0.13 -1.55 16 4 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 5 C -0.11 -2.30 7.59 31.12 0.24 -2.07 16 6 C -0.12 -2.92 7.88 31.13 0.25 -2.67 16 7 C 0.07 2.05 4.14 45.44 0.19 2.24 16 8 H 0.06 1.78 7.87 -2.39 -0.02 1.76 16 9 N -0.67 -26.15 6.41 -488.84 -3.13 -29.29 16 10 C 0.09 4.17 5.47 86.31 0.47 4.64 16 11 C 0.02 0.96 4.54 29.85 0.14 1.09 16 12 C -0.62 -37.24 9.11 25.60 0.23 -37.01 16 13 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 14 C -0.04 -2.35 5.46 84.66 0.46 -1.89 16 15 N -0.94 -60.54 13.65 21.45 0.29 -60.25 16 16 Si 1.12 51.52 29.90 68.60 2.05 53.57 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.34 13.76 6.26 -92.25 -0.58 13.18 16 28 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.02 0.74 8.13 -2.39 -0.02 0.72 16 30 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 31 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 32 H 0.25 16.82 7.22 -92.70 -0.67 16.15 16 Total: -1.00 -69.54 276.94 2.01 -67.54 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.60 Total: 16.07 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.32 Total: -37.70 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.84 Total: -89.53 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.13 Total: -9.95 kcal Total: -69.54 2.01 -67.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591837201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.242 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds